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I have generated a VCF using BCFtools on CentOS 7. When calling Vartrix, this VCF is not recognized :
Vartrix error. v1.1.14.
Error: failed to open BCF/VCF from /home/ulb/iribhm/atourneu/variant/ATC…
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## Expected Behavior
successfully run easy-predict on large chromosome-level genome assembly (within BUSCO)
## Current Behavior
metaeuk runs, but runs out of disk space (5TB), even if I impose a …
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Hi,
thank you for providing this tool to simulate variation reference data.
I get a segmentation fault (core dump) when I run:
```
simuscop-master/bin/simuReads ./config_WES_TN.txt
Details of…
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Hello Geroge, such a great tool you have in hybracter!!
I have been using it to assemble some ONT only genomes, without using medaka, and I have seen that even though dnaapler is run on the chromos…
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## Bug report
### Expected behavior and actual behavior
Running an nf-core pipeline would download the charliecloud images on-demand.
When multiple different processes are scheduled at the s…
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Is there a way to set a memory cap for metabolic? Is it sufficient just to reduce the number of cores used? (I was running w/ 40 cores and it ate up 1TB of RAM, which was unexpected and a little unkin…
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Hello
I have tried to install fastANI on my mac with M1 chip but I received the following error:
src/cgi/core_genome_identity.cpp:11:10: fatal error: 'omp.h' file not found
I followed various t…
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Hello,
I am trying to generate a core genome tree for a bacterial plant pathogen local outbreak (_Ralstonia solanacearum_) using the output of IQtree with the output of **snp-sites -c**. I have tr…
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While running sga index I get this:
```
Building index for preprocessed.fastq in memory using ropebwt
done bwt construction, generating .sai file
sga: SampledSuffixArray.cpp:163: void Sample…
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**Are you using the latest release?**
If you are not using the latest release of funannotate, please upgrade, if bug persists then report here.
**Describe the bug**
A clear and concise descriptio…