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Hi, this is a very useful tool, but i met some error here
I'm running in centos7 zsh:
bed2gtf --bed test.bed12 --isoforms test.isoform --output test.gtf
you could see many "exon_number 0" have bee…
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**I have read the paper (https://doi.org/10.1038/s41467-020-15171-6)
and the manual (https://flair.readthedocs.io/en/latest/) and I still have a question about**: predictProductivity
Hi there, t…
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Hello,
I tried to perform ChimeraTE Mode 2 analyses and created all the input files as explained in the read.me.
When starting the run, it creates the indices for both fasta files. However, the …
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# Design
@pablo-gar writes:
This information is already calculated from the pinned Gene References and is readily available here `single-cell-curation/cellxgene_schema_cli/cellxgene_schema/ontology_…
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https://mp.weixin.qq.com/s/nJY-cuGujP4d-4UtkHO9Xg
ixxmu updated
3 months ago
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Hi team,
I run multiple samples simultaneously through Bambu
```r
samples 126846 -
82 .
123992 +
There is no `.` in the reference genome annotation file. Can anyone explain why they are…
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Hello ,
I am doing the denvo transcriptome assembly, please guide me how to remove the isoforms in the transcript.fa file,
The output of transcript.fa file has transcript start as E1,E2, E3.
wha…
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**Operating system**
Linux
**Package name**
pigeon --classify command
**Conda environment**
What is the result of `conda list`? (Try to paste that between [triple backticks](https://help.gith…
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Hi,
I keep getting an error message and empty output files (data.index, data.json, data.log, data.readcount eventalign.index) when running the xpore dataprep step for genomic coordinates.
I have …
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If a category has no isoforms it, errors like the following occur:
```
Quitting from lines 385-393 [p4.s1_p4.s2_p4.s3] (SQANTI3_report.Rmd)
Error in `ans[ypos] % layout(showleg…