-
I managed to replicate the issue:
```text
Error in rule mask_host:
jobid: 1
input: GCF_010909765.2_sAmbRad1.1.pri_genomic.ndrop.fna, hecatomb.out/processing/temp/yeet.sam.gz
output:…
-
Hi,
it happened to me that `overlapInCorePartition` generated too many partitions and a 67GB large `correction/1-overlapper/overlap.sh` shellscript, practically just huge if/else code which a call …
-
```
#########################################################
Running `funannotate clean` unit testing: minimap2 mediated assembly duplications
Downloading: https://osf.io/8pjbe/download?version=1 …
-
### Description of feature
We can try to setup the workflow to validate input sample sheet using a new plugin from the nf-core community
https://nextflow-io.github.io/nf-validation/
-
Hi
This is not a bug, but a question.
I'm in the search for a software that can help me build a HMM that can identify imprinted regions using data produced with dorado and modkit from Oxford Nan…
-
Hi, when I use clair3(v1.0.5) to call variants in HG002's PacBio HiFi 15-20kb chemistry2 reads, I typed the run_clair3.sh command twice in the command line, using the same inputs, but the results of m…
-
Hello everyone,
First of all, thank for reading me. I am a phd student in biology, and I am learning on my side some bio-informatics stuff, without any background.
Since several months, I have …
-
I am new to this method of genome assembly, so I am struggling a little with installing Canu.
I think I should use the following command (but I am not sure):
`curl -L https://github.com/marbl/can…
-
Describe the issue:
Hello, i am trying to recreate the steps done in this post: https://google.github.io/deepvariant/posts/2021-02-08-the-haplotype-channel/
I have a bam file with phasing informatio…
-
Small question regarding the models for base-calling.
We ran sequencing at 260 bps and the latest available model appears to be "dna_r10.4.1_e8.2_260bps_sup@v4.1.0". Now, for 400 bps, many more mo…