-
Inspired by this [Slack thread](https://nextflow.slack.com/archives/C02T98A23U7/p1655905727166399). The Nextflow docs mention hybrid workflows for [AWS Batch](https://www.nextflow.io/docs/latest/aws.h…
-
Hi @hoelzer ,
Keep on getting the following error:
```
[Actor Thread 3] ERROR nextflow.extension.OperatorEx - @unknown
java.lang.IllegalArgumentException: Argument of `file` function cannot be…
-
**What is the Bug Related To? Please Provide a Description.**
**Place an :x: in a Box that Best Matches the Bug's Importance:**
* [x] **1** - Most severe (a full-break in core function)
*…
-
When a error is encountered with the `reformat-vcf-table.py` script, but its stdout is being piped, the overall exit code of the processes is returned as 0, allowing broken files to pass through the N…
-
### Description of the bug
As referenced here #83
I am still stopped at this point:
`run_stager.R CP_TG-CP_WT DEXSeqResults.CP_TG-CP_WT.tsv perGeneQValue.CP_TG-CP_WT.tsv dexseq`
` Error in…
-
Hello. Regarding this line and the similar logic in the functions around it:
https://github.com/nextflow-io/nextflow/blob/b099d430aa06b350ff63b6f3ae291dd72f49c779/plugins/nf-amazon/src/main/nextflo…
-
### BioProject Checklist:
---------------
- [x] PRJNA550508
- [x] PRJNA529179
- [x] PRJNA528770
- [x] PRJNA524691
- [x] PRJNA521303
- [x] PRJNA516950
- [x] PRJNA508364
- [x] PRJNA488534
- [x…
-
nf-core is an opensource nextflow pipeline application and community with standards that we should be aware of:
https://nf-co.re/
-
Hi there,
I am currently trying to run the illumination correction code for McMicro and I am running into an error regarding both Java and amd64/arm64 platforms. I confirmed that I have Java 21 in…
-
[//]: # (Please do not include your AWS account or credentials as part of the bug request.)
**Describe the Bug**
[//]: # (Please describe the behavior that you are seeing with as many details …