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## Use Case
*Please provide a use case to help us understand your request in context*
A lot of imaging datasets are stored as a single acquisition split into many individual files.
For example: a…
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Hello
I noticed that the background subtraction option became avaiable in mcmicro. Would it be possible to get step-by-step instructions how to structure input directories and files to include backgr…
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We've seen some CellDIVE processing failures recently, which manifest as errors in SPRM -- this often looks like segmentation mask files that are missing one or more expected channels. This occurs due…
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We imaged a bit of tissue with non square positions to save time and disk space.
Is there any way to input the positions in a fileseries input?
If not, only by inputting ome.tiffs with coordinates…
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### Description
Hi, I was wondering if we can try to implement an image writer. There are multiple readers but no writers. I think it can be interesting to have the possibility of writing images to…
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Hi
I have noticed that when I run qupath-cellpose script for project, sometimes imy batch run just gets stuck on one image and cannot proceed.
At this point, my only options is to kill qupath a…
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Hello there,
Many thanks for the great tools! really enjoy using it and it's been a irreplacable tool in our pipeline now.
I am recently having some issue of one microscope producing wrong metadat…
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First of all, thanks for creating and maintaining suite2p. It's a wonderful utility!
This is related to #135 but I think a new error that has not been reported.
Briefly, I have large (~20GB) TIF…
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In [`76cf08f`](https://github.com/BioImage-Archive/upptime/commit/76cf08fc658498141e74a29b5091ed145ee76d78
), S-BIAD531 (https://www.ebi.ac.uk/biostudies/files/S-BIAD531/Zebrafish_ML_Archive/outputs/2…
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The current description is:
```
Library for reading and writing ND imaging data with metadata in ome-zarr and ome-tiff formats
```
And I would like to propose a rewording:
```
N-dimensiona…