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**Date**: May 10th
**Time**: 1pm UK time ([other times](https://www.timeanddate.com/worldclock/meetingdetails.html?year=2022&month=5&day=10&hour=12&min=0&sec=0&p1=43&p2=136&p3=37&p4=771&p5=235&p6=152…
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## *Repository Creation Request for Bioinformatics and Computational Biology*
1. #### Coordinating Institute: Amrita Vishwa Vidyapeetham
2. #### Approver’s Name: Dr. Shyam Diwakar
3. #### …
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Hi Gotoh,
Recently, I'm trying to replace genewise with your spaln. I found spaln could get more expected gene structure as query protein. It seems great! To apply in non-model and non-reference ge…
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From: https://github.com/mskcc/vcf2maf/blob/main/vcf2maf.pl
The original vcf2maf perl implementation appears to add a bunch of nonstandard but very useful columns when converting VCFs to MAF files
…
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I have installed Alphafold in locally. What does it mean ? Still running.
I have installed Alphafold in locally. What does it mean ? Still running.
--template_mmcif_dir: Path to a directory wi…
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Hi,
I would like to predict structures for some given sequences using ESM3. I am using the following code snippet for it
```
structure_prediction_config = GenerationConfig(
track="structur…
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- Atom level + residue/bases level
- `get_contact_atoms` in pdb2sql has already an `allchains` parameter.
- Do we want to indicate which chains should be considered for the interface? Or should we j…
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If we want types, (which are be useful) maybe we should all specify
protein, ncRNA…
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We know the cleaveage sites into the protein, as explained here.
> SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor
Published on Cell, …
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[e3nn](https://www.connectedpapers.com/main/c7215ab4589ce3590910c597e86b1aba8e460d49/e3nn%3A-Euclidean-Neural-Networks/graph)
```mermaid
flowchart TD;
A[Freeman,1991\nThe design and use of stee…