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Please provide as much information as you can:
MP, HPO, and ZP all have phenotypes related to premature and delayed closure of sutures. The UPheno group would like to use GO process terms to create …
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### Description of the bug
The test command does not succeed.
### Command used and terminal output
```console
~/bin/nextflow-22.04.0-all run main.nf -profile test,singularity --outdir /home/val…
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https://docs.google.com/document/d/17hiqcLGmZCb1wLladmmj6ayUGVnoK6cD8eQvC6Fgqrc/edit
- [x] Finalize the fields to check for uniqueness of SV records. Add the check to validator/ add a unit test.
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Hello,
**Describe the bug**
I am using the lastest version of Funannotate and I am having problems with funannotate update. I think the problem is related with the function gff2pasa and my annot…
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Hi, I'm running RNAseq for CML patients. However, the fusion.tsv and visualization pdf did not show the main fusion gene for CML (eg: BCR, ABL1 gene). I'm using GRCh38+GENCODE28 for annotation. Is thi…
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Hi Alexander Gusev,
Did you figure out this issue (Error in out.tbl$EQTL.ID[w]
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From this comment, there are a few website references which we should update:
Hi @jashapiro - these changes look good. The Cell format and biorxiv changes look as expected.
I did notice some o…
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Hi, so I ran arriba for both hg38 and hg19; on the hg38 it renders the fusion perfectly and I can see that the fusion is what I would expect for the domains and breakpoints. However on hg19 is a diff…
ahdee updated
2 years ago
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#### What analysis module should be updated and why?
https://github.com/d3b-center/D3b-codes/tree/master/gene_match
1) Move this gene match module to PediatricOpenTargets
2) Change the file pa…
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Hi, there
Good AGAT for the analysis for the gtf or gff3 files. I have used the agat_convert_sp_gxf2gxf.pl to add the gene name into the final gffs files ,it works well. After I check the results …