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Hello!
In the paper, it is mentioned that "The current best assembly spans 15.34 Gbp, while the GenomeScope estimate is 14.1 Gbp (see Supplementary Figs. 21 and 22)". Fig. S21, GenomeScope estimate…
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i have around 60 samples, that performed paired-end seq for metagenome, total ~400G clean data.
i have combine all forward reads and reverse reads, gained F.fastq,gz and R.fastq.gz. and than i run:
…
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Hi,
Thanks for this wonderful tool! I'm writing to ask a question about the color of unitigs. I found about 3% of the unitigs created from Bifrost is of no colors. Is this because these unitigs do …
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I need to detect the source of paired reads for a batch of sequencing data, and each time I need to reload the database into memory, the loading speed is very slow. Can the database be loaded into mem…
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I used cDNA_MINES.py command and it gives me following error with command-
python /home/aclab/apps/MINES/cDNA_MINES.py --fraction_modified control.fraction_modified_reads.plus.wig.bed --coverage con…
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## Expected Behavior
Hello, I am mapping a small database of peptide k-mers 8-15 AA length (8,408 sequences, summary length of 77,356) to a translated genome sequence database (756,891 sequences, sum…
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Hello all,
I am using GATB library for my work. I have a naive question which I have not been able to find an answer for. While using one of the functions to find the abundance of a node (queryAbunda…
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Hi, I am trying to build a bracken database from a kraken database built with this code:
kraken2-build --download-taxonomy --db fungi
kraken2-build --download-library fungi --db fungi
kraken2-buil…
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submitted jobs using the aws batch executor show as failed even though sketches are being created and moved to the designated `outdir` location.
[Logs](https://us-west-2.console.aws.amazon.com/clo…
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Hello,
This software is very cool. I'm trying to estimate genome size on PacBio reads using your software. The readme mentions that the output stat file can be used as input in GCE and correct_erro…