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I am runing the example commands, but I have got error bellow.
```
(deepmod2) hew@DNA2:~/GitRepo$ python ${INPUT_DIR}/DeepMod2/deepmod2 detect --model bilstm_r10.4.1_5khz_v4.3 --file_type pod5 --…
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### Description of feature
We should somehow allow specifying different profiling parameters depending on whether a database is for short-read or long-read use.
e.g. for bracken, a database of 400…
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Hi,
I've followed the steps you suggested (or explained in the manual).
Here's a summary of what I did:
1. Installed sequali via conda (python 3.8).
2. Added the ultra-long RA as the only "…
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Hi,
I was trying to us pypor alignment but it gave me this error:
File "~/.local/lib/python2.7/site-packages/PyPore-0.1-py2.7.egg/lib/alignment.py", line 26, in MainReader
th = args.threa…
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I test the example dataset within singularity, but met some probelm until ###GMAP MAPPING STARTED AT: 13:06:26 21-03 ###
###BUILD INDEX###
bellow is Error message:
Traceback (most recent call l…
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```
#########################################################
Running `funannotate clean` unit testing: minimap2 mediated assembly duplications
Downloading: https://osf.io/8pjbe/download?version=1 …
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Hi,
Thank you for developing this tool. I have been trying to use IsoQuant with my data, but the run takes a lot of RAM usage and a long time (not finished yet).
Specifically,
- My data: singl…
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# Issue Report
## Please describe the issue:
I have a DNA sample sequenced with R9.4.1 that I wonder if I could do duplex basecalling on it or not.
According to the current model selection so…
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Hello Simone,
Thank you so much for developing and sharing this software package. I am a new user trying to use UMInator to analyze Nanopore long-read UMI-barcoded data.
Because my lab does no…
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Hi, When I ran IsoQuant, the following error showed:
```
2024-03-11 03:24:09,459 - INFO - Loading read assignments from /exports/archive/hg-exon-skip/Qirong/IsoQuant_output/wildtype/OUT/aux/OUT.save…