-
Hi xfengenfx
recently，i use the hifiam-meta to assemble my metagenomic HIFI data，i encountered same error in two times at two compute
cluster，which shows stop at the Writing GFA step suddenly. h…
-
Hi,
I just wanted to clarify an aspect or two regarding using Hi-C reads. You write "Preliminary support is available for read sets binned by haplotype from another method, such as [PGAS](https://git…
-
Hello
It seems there are duplicate edges in the produces GFA. What is the purpose of these?
E.g. if we'd take `sheepB.hifiasm-meta.a_ctg.gfa.gz` then we'll end with:
```
L s0.ctg000590…
-
Hello Chenxi,
Having some very nice results with yahs so far, thank you for writing such a nice & comparatively simple-to-use tool.
However I am finding that one particular dataset I am working…
-
After using hifiasm to generate partially-phased assemblies (the `bp.hap?.p_ctg.gfa` files), I am confused about regions where the assembly is apparently missing for one of the two assemblies.
For …
-
I wondered how can I change the default kmer length (k=17), I'd like to raise it up to 51, like the one used in hifiasm. I'm using hifi reads.
The genome assembled by flye is much smaller than expec…
-
in your article "Bovine pangenome reveals trait associated structural variation from diverse assembly inputs" , we want to Construct a pangenome for my project，can you provide me codes ？ thanks~
-
Dear author,
I am wondering if it's recommended to polish an assembly more than once consecutively to get the best results with Hapo-G? Or once is enough? In my case I assembled my plant diploid ge…
-
Hello!
I encountered a problem when running canu, and finally got contings_ FASTA is very small. I use other software, such as the contigs obtained by fly and hifiasm_ The FASTA size is 817M, but t…
-
Hi,
I am trying to scaffold a genome using a genetic map but get an error in the logging process that I cannot find the cause of.
Could you please shed some light on it?
```
python -m jcvi.ass…