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Hi,
I am running tide+percolator on my mass spectra. My understanding is that Percolator re-estimates the FDR of PSMs identified by tide and should not change the peptide identifications. However, …
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I am trying to run open-workflow on a timsTOFpro data but it is failing with "could not find mzData" message? I have loaded the output folder at https://drive.google.com/drive/folders/1U_n-hxpWwUq7EDj…
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Interesting: Yesterday I downloaded PDV to view data generated in Fragpipe, and it worked nicely. I was able to open the View>Column Selection. and added the proteinID and descriptions (these are rea…
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Francesca will create the framework to test a simulated dataset based on the Rieckmann proteomics data. This includes:
- creation of a docker image that builds the simulated dataset and produces a 't…
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[log_2021-06-11_10-52-33.zip](https://github.com/Nesvilab/FragPipe/files/6637134/log_2021-06-11_10-52-33.zip)
Pipe/files/6637097/log_2021-06-11_10-14-33.txt)
- Describe the issue or question:
…
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Hi, is there a way of fixing this error?
[PeptideShaker.log](https://github.com/compomics/peptide-shaker/files/6213500/PeptideShaker.log)
Thank you!
Carla Uranga
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Hi Marc and Harald,
I am currently reanalyzing melanoma data (the test I describe here, is performed on file 20141212_QEp7_MiBa_SA_HLA-I-p_MM16_1_A.raw of ProteomeXChange dataset PXD004894). The RA…
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Hi, Thank you very much for developing this package.
I have just set up PCAtools today and I tried to make a PCA plot of expression profiles (transformed by `vst` function in DESeq2) by the followi…
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Dear all,
I am trying to analyze tims tof pro data with Open search and I ran into this error described below.
INFO[01:07:14] Executing Filter v3.4.13
INFO[01:07:14] Processi…
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Hi Felipe, is there an example file for running a pipeline?
Ideally, it would write the results into the same directory.
Best, Robert