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Hi. My gtf has a complex locus with two long overlapping transcripts that run in opposite directions. I really want to have good counts of both genes per cell. I have single nucleus RNAseq data, so lo…
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Hi,
In your [Whole Blood Fine-Mapping paper](https://www.nature.com/articles/s41467-021-23134-8), it's mentioned that "5313 Basenji features corresponding to functional activity predictors" were us…
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Many terms
MONDO:0013519
A dyskeratosis congenita that has_material_basis_in an autosomal recessive mutation of NOLA2 on chromosome 5q35.3.
NOLA2 = NHP2
MONDO:0009136
Definition
A dyskera…
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### Background:
###### A concise description of why we're pursuing this task.
Dave Cutler's recommendations for stuff they would find meaningful, and which we should do our best to get in before end…
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Hey Alex,
I'm assuming your probably going to write something up on the changes, but from my searching in the docs it seems there is some prioritization of the reads when considered for unspliced c…
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Hello,
I have downloaded GTEx rna-seq data from this site:
wget https://storage.googleapis.com/gtex_analysis_v8/rna_seq_data/GTEx_Analysis_2017-06-05_v8_RNASeQCv1.1.9_gene_reads.gct.gz
I want to ex…
ghost updated
7 months ago
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Hi! I’m running the BRaVa analyses for Genes & Health. We’re running in to a repeated issue with Step 2 of the universal-Saige pipeline and could really use some help!
The problem occurs during th…
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Hi,
@LiNiMGI and I have noticed that the table of annotations does not display a "NOT" to indicate when a negative annotation has been made.
We were looking at previously existing annotations in…
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When looking at the pipeline results for ZFIN, namely the "final" GAF, almost 7k annotations have been assigned to `taxon:0`.
There are a few theories about why this may be occurring and we are wo…
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Nico noted in [phenio #33](https://github.com/monarch-initiative/phenio/issues/33#issuecomment-1375896806) that we should be be mapping anatomy terms to Uberon rather than using the species specific o…