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Hi,
quick question, would this also work on nanopore data (10.4 flow cells)? what would be the optimal settings to run ska2 on?
thanks!
Pieter
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Hi,
Thank you for making a pipeline for nanopore reads analysis.
I have some fasta sequence files from the nanopore sequencer that I want to analyse using the pipeline. I had nanopore amplicons …
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Hi,
Dorado Developers.
Firstly, I'd like to express my gratitude for developing such an innovative tool for the Nanopore sequencing community. The addition of the "--estimate-poly-a" parameter in D…
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### Description of the bug
I have Nanopore reads aligned to the GRCh38_hmf reference using minimap2, as it's the recommended tool to use for Nanopore reads. I get an error message at the process NF…
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### Description of feature
Since Porechop is no longer supported, it is maybe useful to investigate [Porechop_ABI](https://github.com/bonsai-team/Porechop_ABI) as alternative.
Or https://github.…
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Hello, i am trying to use NanoPlot on fastq files created from Nanopore reads to filter the reads, create plots and create a summary file.
But i get the error: --maxlength: command not found
What c…
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Hello,
We were using the dev-branch and running the example Nanopore data and it worked correctly without errors, but we are having issues running Natrix with our own data (also Nanopore data). We …
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**Describe the bug**
I am trying to use phables on my metagenome assembly, assembled with metaFlye.
**To Reproduce**
Steps to reproduce the behaviour, including the
1. Command executed
```
pha…
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Hi there,
I'm trying to diagnose some issues with the output of the pipeline. One file I look at is `refs_present.csv`. I have noticed that some of the numbers don't add up or other issues.
For …
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Hi @fenderglass,
I've adopted a strategy using Illumina reads alongside ONT R10 data to construct and evaluate phased genome assemblies. After assembling with `canu`, I followed with `purged_dups`…