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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/statOmics/msqrob2
Confirm the following by editin…
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While processing the cptac data, I ran into a couple of issues with missing/incomplete metadata:
- There are ~115k entries that don't have any `cellLine`/`timePoint`/`treatment` info, currently irg…
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Currently the mapping is in the portal repo but should probably be associated with data objects upstream.
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Hi @hbarsnes
Just tested the latest PS release (https://github.com/bioconda/bioconda-recipes/pull/28155) with Galaxy and got
```
java.io.FileNotFoundException: /tmp/tmpti3s3okg/job_working_di…
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Hi,
I'm trying to search an MS3-TMT file. Error is below. I generated the mzml using MSConvert but perhaps incorrectly. Also using runstart IC. MS2-TMT files processed fine.
Thanks,
Matt
…
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Create a section for each environment that helps a user transition to using the tool/environment in AnVIL
kozbo updated
3 years ago
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Hi @bigbio/collaborators :
The following dataset https://github.com/bigbio/proteomics-metadata-standard/blob/b9b3463bef54e8dd1410d1cac3c9961e67a569af/annotated-projects/PXD003539/PXD003539.sdrf.ts…
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Currently we are pulling just the normalized proteomics from CPTAC. We need to compare the performance of the algorithms on imputed data using https://github.com/WangLab-MSSM/DreamAI
This requires …
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I'm working on insect vector metabolism (mostly on yellow fever/Zika vector Aedes aegypti) and have quantitative proteomic and untargeted metabolomic data for several experimental conditions. Searchi…
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Track down the source of this missing daata