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Need to add:
**active**
- [ ] SenNet CODCC (PI: Jonathan Silverstein) (role: Co-Investigator)
- [ ] KPMP KMAP (PI: Matthias Kretzler) (role: Co-Investigator)
- [ ] 4DN Center 3D Genome Structure…
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## Figure files
https://drive.google.com/drive/u/0/folders/1okzPLhrenRLOsTjQEAiNYaCzXytKCisr
## Panel legends
- [x] a. Overview of experiment design on profiling the entire brain with snmC-seq3 a…
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## Background
Currently, users can view different features (genes, transcripts, exons, etc.) at a genome and their info only at GENE tracks.
It would be convenient to have an ability to view all f…
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Hi,
I have pacbio Hifi read assembly using Hifiasm. Hifiasm gave me much less fragmented assembly as compared to other tools. However, there are more contigs. Some of the them are quite small and…
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## User Story
>AS a website user
>I want add to visualise Hi-C heat maps
>So that it is easy to see how contiguous fragments of chromosomes are assigned
## Acceptance Criteria
>Given I have a datas…
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Dear Olga,
I have now tried different parameters on my dataset. I started with a chromosome-level assembly built from linkage map. The default parameters severely degraded this assembly, which alr…
melop updated
4 years ago
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Hi Tan,
This's Yuyang from Tsinghua Uni, Beijing.
Hope you have a nice holiday.
I just followed the "Typical Workflow" in my server and got trouble at the very beginning step.
`../seqtk-m…
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The team should check out this article, especially @NAnguiano and @anuvarsh.
[Kumar, S., & Dudley, J. (2007). Bioinformatics software for biologists in the genomics era. Bioinformatics, 23(14), 171…
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When I want to add the lookup_table in write.vtk, such as the compartment scores in bed format, I do not know how to prepare it.
I noticed that the row name of the results data frame is "frag_id",w…
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At first I ran a real-case sample with genome size ~2.6Gb and then `instagraal` crashed on a 400Gig machine. So I decreased the size of fragments contacts, which was generated from `hicstuff` (I used …