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I really would like to use your visualization tool with bacterial genomes, but all of the examples I can find are with human data. Can you please provide some examples of exactly how to format your da…
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Nice resource!
Any plans on giving it an update with AllTheBacteria ? (an additional 1,271,428 new assemblies)
[AllTheBacteria - all bacterial genomes assembled, available and searchable](https:/…
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Can I use the Genome Hub with Ensembl bacterial genomes? How would you set the SPECIES_DB_URL and SPECIES_DBS options in this case?
Unlike eukaryotic genomes, bacterial and fungal genomes are not d…
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### Description of feature
It is unclear if this pipeline will work on any organism assembly?
Is it haploid genomes only?
Is it especially for bacteria?
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The bacterial genome collection, downloaded from [the Zenodo's ProPhyle source data](https://zenodo.org/record/1054426/files/bacteria.tar.gz), contains some archaeal genomes.
For example, accessio…
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I have assembled few bacterial complete genomes using nanopore long reads via Unicycler bold module followed by multiple rounds of polishing by pilon using Illumina Miseq reads.
While submitting the…
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Dear team,
Just wonder how I can use this tools for bacterial genomes since bacterial genomes are completely different, model should also be very different.
Thanks,
Jianshu
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Extrapolated from common sequencing targets from the SRA, and sequences that returned false positives during initial database screenings:
- Human genome - integration sites: https://hgdownload.soe.…
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Hi folks
For k-SLAM installatin I need to download the NCBI taxonomy, bacterial, and viral genomes (i.e. using install_slam.sh). If I already have these downloaded somewhere can I just point to the…