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Potentially related to: https://github.com/kaizhang/SnapATAC2/issues/360.
A few folks at the Allen Institute have now noticed the normalized bigwigs from snapatac2 don't follow our expectations of …
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I'm hoping to "cut down" a BigWig by only selecting a number of chromosomes. It would be nice if there were a `bigtools bigSelect --chroms chr1,chr2` that did so, and/or `bigtools bigSelect --bed regi…
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I successfully processed one of our ONT samples using the Decoil pipeline. However, I've noticed an inconsistency in the output when running the same sample through two different commands:
- When u…
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It would be great to be able to export the smoothed methylation data to a `BigWig` format that can be visualised in a genome browser (such as IGV, USCS, etc.)
It should be easily done using the `expo…
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Hi Team
I have faced a perplexing issue with all bigwig files loading succesfully (and well-formated with colours/caling) on IGV versions 2.17 (I tested 2.17.0, 2.17.4 and 2.18.2).
As an example…
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Hi Kai,
Is that possible we can provide more parameters to simulate the behavior of bamCovrage:
https://deeptools.readthedocs.io/en/develop/content/tools/bamCoverage.html
I think it might be no…
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Hello,
Thank you for serving such a nice tool in advance.
I tried to upload bigwig files that were separated for forward and reverse strand. In case of reverse stranded bigWig files, they have n…
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So whenever I'm playing my druid (level 18, hardcore & slow and steady), I permanently get error messages whenever I target anything (even myself) or lose the target by hitting escape or clicking into…
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Thank you for your amazing work!
I want to try this model as soon as possible, but I find that some files in the tutorial are missing.
Have the trained model weights (ckpt files) been released? If …