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Good day,
I would like to perform Differential methylation scoring.
Is there a way to identify the number of hypo and/or hyper differentially methylated regions in introns, exons, promoters, TSS, 5′…
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I can't find the differential methylation analysis workflow
![image](https://user-images.githubusercontent.com/60050958/126763656-ed9df46a-bd29-43aa-9f16-72f5e9fe5b9c.png)
![image](https://user-imag…
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**DO NOT INCLUDE REQUESTS IN THE FIRST COMMENT.**
**PLEASE POST THIS TEMPLATE UNCHANGED THEN FOLLOW ITS INSTRUCTIONS IN A NEW
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# General Notes
This repository serves as a mostly automated p…
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example: https://pubmed.ncbi.nlm.nih.gov/37081487/
[pycoMeth: a toolbox for differential methylation testing from Nanopore methylation calls]( https://pubmed.ncbi.nlm.nih.gov/37081487/)
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Hello MerenLab,
While at EBAME I was encouraged to open this discussion by @FlorianTrigodet and @ivagljiva, and bring it to @semiller10's attention.
DNA methylation is on the verge of constituti…
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Thank you for this wonderful package.
I was looking through the vignettes on differential methylation, and was wondering if for my dataset I have multiple samples from the same individuals from di…
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'Warning: Error in combn: n < m' comes up no matter what parameters I select. How do I switch the n and m?
John
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Hello,
I ran a preliminary experiment to see if the all contexts methylation models work in an unusual system. Basically, I amplified the whole genome to remove any marks, then treated samples with…
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Hello Team,
I have successfully extracted the methylation calls and have generated the bed file, but I am trying to find out the differentially methylated regions for the same.Can you suggest me ho…