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Preferred Term: single-nucleus methylcytosine and transcriptome sequencing assay
Synonyms: snmCT-seq
Definition: A multiomic method to measure the cytosine DNA methylation and gene expression signat…
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Hello again!
I want to process the sequencing data obtained by Croce _et al_ in **"Phage display profiling of CDR3β loops enables machine learning predictions of NY-ESO-1 specific TCRs"** with TRUS…
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### Description
For human DNA samples customers can order different analysis workflow but they can also order sequencing only (FASTQ) where we just send them the FASTQ files.
This option does not …
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Hi,
We'd like to request a new term as part of the CFDE project for Kids First DCC.
new term label: linked-read sequencing assay
parent: DNA sequencing assay, OBI:0000626
definition: A DNA seq…
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I believe v6.1 includes only 4 section names:
- `sequencing` ; terms that relate to how the DNA sample was processed for sequencing.
- `environment` ; terms that relate to the environment from which…
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Small question regarding the models for base-calling.
We ran sequencing at 260 bps and the latest available model appears to be "dna_r10.4.1_e8.2_260bps_sup@v4.1.0". Now, for 400 bps, many more mo…
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I want to create a `variant_catalog.json` file to identify VNTR in FcRn gene using WGS sequencing data.
The FcRn gene contains a VNTR sequence consisting of three repeats of 37 nucleotides each, wit…
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Dear aroth85,
Thank you for developing pyclone-vi,
I would like to use the software to caculate CCF from targeted DNA sequencing data. I have performed SNV/INDEL calling and CNV to obtain minor…
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@mandichen
Hi,mandichen
Good job and I am very interested in your research, but I have some questions.I used the sample data BM2_v0s0_n_200.h5ad and Macosko_cell_cycle_genes.txt to get the follow…
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Before reasoning, OBI:0000992 [DNA sequencing service](http://purl.obolibrary.org/obo/OBI_0000992) currently appears under `owl:Thing` at the top of the class hierarchy, next to 'entity' and 'Obsolete…