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To be able to routinely do fluroescence scans we would need to be able to put the data into ispyb such as https://ispyb.diamond.ac.uk/dc/visit/cm37235-2/ty/mca/id/15180.
## Acceptance Criteria
* W…
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Hello,
I have been working with the fluorescence nuclei and cells model, and I would like to fine-tune it on some additional annotated data that I have.
I used the download_model function, which…
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@maulakhan
If you don't have it yet, I think we should also add an example with **fluorescence data**.
Either in the activity or in the exercise.
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- cellpose's 3d algorithm fails with our brightfield data. our XZ and YZ slices are riddled with diffraction that make cell identification extremely difficult
- cellpose's 3d algorithm works well wi…
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As a user I would like to be able to analyse data that comes from the fluorescence detector. In https://github.com/DiamondLightSource/mx-bluesky/issues/236 we found that we could write out data write …
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Will require (hard)coding the path to the relevant field(s), like what we have for the energy and lni0it paths.
Blocked until we get some example NXS files to work with/use in tests.
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I'm planning to move the fluorescence reconstructions to `torch` and to the new `model`-based structure.
- the `waveorder_reconstructor/fluorescence_microscopy` class will eventually be deprecated
…
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What's in this image?
![plate1_1_013](https://github.com/user-attachments/assets/24f0e4d6-72ea-449a-b191-03ddaec3b155)
Source: Heriche et al
License: [CC BY 4.0](https://creativecommons.org/li…
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Hi,
I have two recordings from two channels (Ch1 and Ch2) of same ROI:
- Neurons in Ch1 and Ch2 have certain level of overlap.
- Neurons in Ch1 have normal activity, while neurons in Ch2 …
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First, thanks a lot for making your datasets publicly available!
I had a brief look into the calcium imaging data set, and I have a very short and specific question: The data set includes the "raw …