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Preferred Term: single-nucleus methylcytosine and transcriptome sequencing assay
Synonyms: snmCT-seq
Definition: A multiomic method to measure the cytosine DNA methylation and gene expression signat…
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I want to create a `variant_catalog.json` file to identify VNTR in FcRn gene using WGS sequencing data.
The FcRn gene contains a VNTR sequence consisting of three repeats of 37 nucleotides each, wit…
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CNPS.cycle package is a convenient and useful tool for analyzing metagenome sequencing data that can help identify genes and taxa involved in element cycle metabolic pathways. I have installed CNPS.cy…
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Should expand these terms to enable reporting of the recovery of other taxonomic marker genes, not just 16S?
## Current term details of 16S recovered [[MIXS:0000065](https://genomicsstandardsconsor…
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**Context**
NS-Forest algorithm identifies minimal combinations of marker genes that can accurately classify and define cell types from single-cell RNA sequencing datasets. We need a design pattern t…
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Hi author,
Thanks for developing this brilliant isoform analytical tool!
May I ask where could I find the splice junctions of annotated isoforms and the types of alternative splicing events fro…
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Hi @jodyphelan,
I profiled my tNGS data obtained from nanopore sequencing using TB-profiler and it presented two variants in the _rpoB_ gene: L430P (761,095) and D435A (761,110) both variants assoc…
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Hello, thanks for your great approach!
In the github project, we found that you only provided mouse aging_gene_sets. Can I use these gene sets for human single-cell sequencing? If not, can you provid…
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This relates to cases where a study contains a sample which appears to be part of a genetic profile, but the sample is not present in data_gene_matrix.txt, or the gene panel id value is 'NA' or missin…
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Implement RNA-Sequence Analysis Workflow as per the following steps.
Quality assess and clean raw sequencing data
Align reads to a reference
Count the number of reads assigned to each contig/gene…