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Hi author, how do I install torch-persistent-homology==0.1.
when I type
`pip install torch-persistent-homology==0.1`,
it will output
```
ERROR: Could not find a version that satisfies the requ…
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while running homology modelling with "create new disulfide" option, I encountered this:
Pymod has encountered an unknown error in the modelling session: 'No such residue: "9"; did you mean "9:A" ?'
…
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In the readme, there is this section:
```
[MCScanX_h](https://github.com/wyp1125/MCScanX#id8)
The BLASTP input of MCScanX can be replaced by a tab-delimited file containing more reliable pairwise…
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We used to include a TSV of all anatomical homologies. This is useful for users and also for us (e.g. to coordinate with Bgee if we plan to obsolete a term that may be in the table)
This used to be…
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Since several users have asked: we should provide an example showing how to use persistence to compute the relative homology of a complex and a subcomplex (mostly how to interpret the result).
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```
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Chr8 EDTA helitron 28596870 28597251 2596 + . ID=TE_homo_201873;Name=TE_00002121;classification=DNAnona/Helitron;sequence_ontology=S
O:0000544;iden…
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This happens in the MYTK MoClo kit, where the sequence of the homology arms of 500bp does not exactly match that of the genome, having a few mistmaches. What to do in a case like this? Include `N`s?
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Respect to what does it make sense to define them?
* With respect to the insert, so that if the insert is inverted it goes the other way around
* With respect to the homology region (as is) so that …
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Homology search started at 2024-08-21 08:40:06.163220.
Settings:
Search method: diamond.
Self-alignment method: native.
Remote fetch enabled: no.
Reading input proteins...
Sulfurospirill…
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Hi @BjornFJohansson,
I think it would be nice if we allowed adding spacers to the primers generated by `assembly_fragments`, so that they contain an extra sequence between the part that binds to th…