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Hi ! I got this error :
```
benjamin@MacBook-Pro-de-Benjamin ~ % git clone https://github.com/Illumina/ExpansionHunterDenovo.git
Clonage dans 'ExpansionHunterDenovo'...
remote: Enumerating obje…
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https://github.com/Zilong-Li/vcfppR/blob/adf370c3a474a7ea66301f0523f16ee2cae78434/src/htslib-1.19.1/Makefile.vcfppR#L35
Resetting `CPPFLAGS` breaks compilation of htslib in environments with non-st…
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I see the [BAM encoder](https://github.com/zaeleus/noodles/blob/master/noodles-bam/src/record/codec/encoder/sequence.rs#L48-L69) disallows U.
We recently had a samtools/htslib [issue](https://githu…
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Dear PBSIM3 maintainers,
I am YU Zhejian from the Zhejiang University-University of Edinburgh Institute. Our group has been using PBSIM1/2/3 to simulate long-read RNA-Seq reads (with [YASIM](https:…
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安装过程中出现如下报错：
make
g++ -Wl,--rpath=/work/user/yaoy/biosoft/RAfilter/src/htslib/ --std=c++11 -L htslib/ -lhts -static-libstdc++ -I htslib/htslib/ -lpthread -c -o main.o main.cpp
g++ -Wl,--rpath=/wo…
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Essentially we need to add to all the environment.ymls
```yml
channels:
- conda-forge
- bioconda
dependencies:
# renovate: datasource=conda depName=bioconda/bwa
- bwa=0.7.18
# renova…
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C library for high-throughput sequencing data formats
https://github.com/samtools/htslib
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hello,
I tried
#this will create a directory named vt in the directory you cloned the repository
1. git clone https://github.com/atks/vt.git
#change directory to vt
2. cd vt
#u…
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The htslib build process needs to build `htscodecs/htscodecs/version.h`, since it isn't shipped in the htscodecs repository. This is accomplished here:
https://github.com/samtools/htslib/blob/2ff20…
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htslib 1.10 widens a couple of fields in `bcf1_t` from 32-bit to 64-bit. We'll need to update [BCFSerialize.cc](https://github.com/dnanexus-rnd/GLnexus/blob/master/src/BCFSerialize.cc) & tests to matc…
mlin updated
2 months ago