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Hi @jmuhlich, thanks to you and your team for providing this easy-to-use software to the community! I'd like to try MCMICRO on my ISS (in situ sequencing) data, which belongs to a branch in spatial tr…
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Hi all,
EagleC had offered structural variants with great precision.
We did a high-depth sequencing of several well-known cell lines to test our hi-c experiments modified from classic in-situ …
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Hi @tlambert03
I really like the idea of `useq-schema`!
Over the last couple of days I've been working on putting together a basic C++ library that uses a combination of:
- [MMCore](https:/…
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These assays are in CELLxGENE (some are still private) but not addressed yet by the Census schema as included or explicitly excluded
```
10x transcription profiling
SORT-seq
CEL-seq
in situ seque…
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#### Description
Running LocalMaxPeakFinder on an image where multiple pixels at the "peak" have the same intensity value (possibly due to saturation or clipping) returns SpotFindingResults where eve…
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Source: GEO
```yaml
label: GSE70770
title: Prostate cancer stratification using molecular profiles
accession: GSE70770
year: 2015
pubmed_id: [26501111, 26950096]
doi: 10.1016/j.ebiom.2015.07…
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Jira ticket:
https://jira.fsm.northwestern.edu/browse/RW-5409
NLP opportunity:
tempus reports are oncoset until May of last year.
Opportunity would be:
- big gap between may of last year and n…
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## Curated
+ HumanMetagenomeDB
+ Description: HumanMetagenomeDB version 1.0 contains metadata of 69 822 metagenomes. We standardized 203 attributes, based on standardized ontologies, describing …
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Hi,
Could you help me understanding why you trimmed to 25bp, and why you look for barcodes in your reads ?
Is there somewhere a schema of the library prep / reads content to better understand those …
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# Design (@brianraymor)
## obs
...
### modality
Key
modality
Annotator
Curator MUST annotate.
Value
categorical wit…