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Is there a way to include multiallelic loci in the binary genotype data. I tried to do the following:
binary_matrix
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Does this information affect my reading speed? I'm comparing the read speed of this library with openslide for the same whole slide image file. I think the text affects the results of the comparison. …
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Hi,
I conducted a test on a dataset and generated my BAM and BAI files using 'samtools'. However, I encountered some errors during the process. I would appreciate any solutions you might have. A…
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Here we enlarge hole size from 250 Kb to 400 Kb to capture those loci falling in 1Mb window. Let's see for how many we do so.
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Currently, downloaded files look like this:
`hg19.STRchive-disease-loci.TRGT.BFiBXWeD.bed`
Would it be possible to append the current STRling version number to the filename so that users can kee…
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Locus breaker identified 41 loci for 40 proteins in which the boundaries' of the locus were the same.
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Hi @BraunThomas,
I tried to use StraglrOn but I have some issues. I'm not sure that I use your addon correctly.
Here the command lines I used:
python straglron.py -o /path/output_directory --his…
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Hi,
What is the general performance expectation for highly polygenic GWAS, with hundreds of GWAS-sig loci?
I am running GCTA-COJO conditional analysis on a case:control GWAS with hundreds of loc…
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Hello,
Thank you very much for a nice package!
My question is: can one use allelefrequencies data to calculate relative usage of different loci in a population or ethnic group? Does it actually …
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Immunochip is specifically designed for immune loci, it cover most of genome, but snp is about 10w