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Proposed roadmap (from @hariszaf in https://github.com/GeomScale/dingo/pull/18):
- implement approach from [cobra toolbox](https://github.com/opencobra/cobratoolbox/blob/master/src/analysis/multiSpe…
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Hi,
I have been working with m2m to do some microbial community metabolic interaction analysis and I have stumble with and issue. When trying to run the mincom minimal_community.mincom() function o…
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Tune random networks to have the topology commonly found in regulatory or metabolic networks
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Hello,
I have run METABOLIC-G three times. One of the three times the analysis gave more present hits in the excel sheet. Also the networks were more in one of the analysis.
This happens onl…
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Hi,
Currently, i am working with brain metabolic networks in rat and i would like to know if it's possible apply the brainncon to plot the brain connectivity data in rat atlas.
Thanks,
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This thread to serve as a request for a presentation at the next Data Stewards / DCPPC call on Alliance for Genome Resources (AGR) Supplement Aims. Specific Aim 2: "Development of interactive and prog…
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Following curation of PMID:24790093 I think this could be a good paper to try to automate the generation of a Noctua model. We can discuss. See the image below (maybe you even mentioned this paper for…
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Inter-omics networks link bio-molecules of different types. They are constructed using biological a priori information showing presence of TF binding sites or H4K12ac epigenetic marks in the promoter …
Sbs12 updated
9 months ago
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Hello,
We have recently published a protein function annotation tool (i.e., [Mantis](https://github.com/PedroMTQ/mantis)) and are now interested in building metabolic networks using the annotations…