-
Hi,
I'm having the aforementioned issue. Here's the output I'm getting from `gtdb_to_ncbi_majority_vote.py`, including the parameters I used:
```
gtdb_to_ncbi_majority_vote.py v0.2.0: Translate…
-
I'll use this issue to document steps to build a `k=31,scaled=1000` index for SRA metagenomes. This is the same process used for the current `k=21,scaled=1000` index in branchwater.sourmash.bio, but c…
-
### Is your feature request related to a problem? Please describe
We go along the road of being precise by using ontology terms, but then dont provide the CURI when downloading metadata.
### Descr…
-
I've read in the documentation that "Roary is not intended for meta-genomics or for comparing extremely diverse sets of genomes". Can you please explain why? What are the drawbacks of using it on gene…
-
### Hello @luispedro @unode
#### What's the recommendation when dealing with soil metagenomes since there is no particular predefined profiler for it or any other metagenome that has no predefined p…
-
Dear users, I wonder if I can use deepBGC with metagenomic samples? In the paper describing the software it is mentioned as a useful tool for this kind of data but I don't know if it is implemented in…
drelo updated
3 years ago
-
Hi,
I'm using this command to generate metagenomes from a set of genome fasta files:
iss generate --draft (list of *.fna files) --output --model nextseq --coverage uniform -p 128 -n 50M
Alt…
-
right now, `mgmanysearch` searches all queries against all metagenomes.
but, in general, you only want to do specific pairs.
seems like it might be worthwhile to support passing in the set of pa…
-
Large metagenomes are taking as much as a day to upload.
-
Hello Tang,
Can I use your pipeline to predict metabolome from Picrust2 predicted KO metagenomes for which I do not have any paired data?