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### Python 3.9
https://github.com/microbiomedata/nmdc-schema/blob/5930933d2115664ddcd94776f0d07201bb409960/.github/workflows/deploy-docs.yaml#L15-L18
https://github.com/microbiomedata/nmdc-schem…
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Included filter_stat_json into output for shortreads because NMDC-EDGE needs it:
https://github.com/microbiomedata/ReadsQC/blob/ddc0cd9f79cc53aa9cf25b40cf67196b5cd71a29/shortReadsqc.wdl#L68
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Options are one or more of the following:
- [ ] WDL validation following example https://github.com/microbiomedata/mg_annotation/blob/master/.github/workflows/create_release.yml
- [ ] Automated tagg…
aclum updated
1 month ago
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In debugging some issues with berkeley it appears that nmdc_automation/import_automation/activity_mapper.py is making records that have keys with empty values.
See lines 97 and 99 of
https://github…
aclum updated
10 minutes ago
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Dependent on:
https://github.com/microbiomedata/metaMS/issues/57
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### Background
"DRS" stands for "Data Repository Service".
There is a DNS record (of type CNAME) for `drs.microbiomedata.org` defined on **LBLnet** (via IP Request). Since August 20, it has poin…
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Update the faceted search `function` section to include Pfam and COG.
depends on #1333, #1337 and https://github.com/microbiomedata/nmdc-aggregator/issues/12
related to FY25 Q1 milestone https:/…
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### Bug summary
just a list of comments
### Bug details
General questions for study creation:
it looks like we must select an environmental template - what of studies that require more than one sa…
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- Can a `DataObject` that is the output of any process use any `FileTypeEnum` in it's `data_object_type` slot?
- do the different permissible values come from different axes of differentiation?
- sh…
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OmicsProcessing was replaced with DataGeneration in berkeley
replace endpoints in the omics processing grouping https://data-berkeley.microbiomedata.org/api/docs#/omics_processing endpoints with da…