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Hi
I am new to nextflow. I ran `sarek-3.4.4` for `mutect2` on the server. Our server is offline. I downloaded nf-prov@1.2.2 from https://github.com/nextflow-io/nf-prov/releases/download/1.2.2/nf-prov…
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### Description of the bug
While setting up taxprofiler on my local machine. I encountered an issue when using conda as the executor. There seems to be a reproducible failure for the process "NFCORE_…
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### Description of the bug
I created a custom pipeline with nf-core tools with minimal features and tried linting it. There were some issues with tests which were easy to fix, however, prettier fails…
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## Background
Seqera, the company behind Nextflow, has released a new much improved developer experience for VS Code, using a new Language Server, with features such as auto-completion, error check…
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### Description of the bug
From terminal output (see below) I see that nextflow tries unsuccessfully to run this:
`singularity pull --name nf-core-bedtools_coreutils-a623c13f66d5262b.img.pulling.1…
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### Operating System
Other Linux (please specify below)
### Other Linux
Oracle Linux 8
### Workflow Version
v2.3.0
### Workflow Execution
Command line (Cluster)
### Other workflow execution
_…
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- [ ] Check for GDC pipeline in nf-core or make one
- [ ] Check for trainings/workshops for learning purposes and share with the team
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### Description of the bug
Dear sarek developers,
First of all, congrats and thanks for your work.
I am new to the Nextflow/nf-core field and I am trying to run the pipeline with my own MOUSE datas…
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### Description of the bug
## Summary
The nextflow version in the gitpod is too low for the demo workflow. I used the Gitpod environment as described in the [nf-core/demo tutorial](https://training.n…
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### Description of the bug
For pfr users:
The nextflow version needs to be updated in the _pfr_assemblyqc_, Otherwise, the following error may happen:
> Failed requirement - Plugin nf-schema@2.1…