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Hi,
I setup Riboseq-flow using NextFlow and Singularity which are installed in a Conda environment. I can run the test without errors.
nextflow run iraiosub/riboseq-flow -r v1.1.1 -resume -profi…
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https://laminlabs.slack.com/archives/C046F63LJJ2/p1717166791874579
And older discussion. I'll write this up as a work package soon. Also decide whether to add this as a nf-core module or keep it fu…
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Hi,I have a few problems, hope to get your help.
my command is :
./toga.py /home/TOGAInput/query/hg38.H.g.final.chain /home/TOGAInput/human_hg38/toga.transcripts.bed /home/TOGA/hg38.2bit /home/TOG…
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Currently the readme lists SDKMAN! as a dependency, but I think the only real dependency is having a Nextflow-compatible java version installed, which on AWS EC2 I've generally just done through the s…
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### Operating System
CentOS 7
### Other Linux
CentOS 7
### Workflow Version
v.23.10.1
### Workflow Execution
Command line
### EPI2ME Version
_No response_
### CLI command run
bsub -J Pore_…
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### Description of the bug
Apologies for rapid-fire bug reports. Trying to churn this analysis out before I get too busy to complete it.
The `--run_ancestry` function appears to not work on my s…
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### Operating System
Other Linux (please specify below)
### Other Linux
Red Hat Enterprise Linux release 8.6
### Workflow Version
v1.1.1-g999fb4e
### Workflow Execution
Command li…
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This is so cool, and makes it possible for citizen scientists to run their own bioinformatics (without access to clusters!)
Could you show a couple of examples of running a vanilla hello world Next…
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The Nextflow pipeline run instructions can be simplified by using a conda environment file (`conda_env.yaml`):
```
name: sicelore-2.1
channels:
- bioconda
- conda-forge
- defaults
depen…
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Hi,
When I try and run NanoCLUST after downloading the latest version of Nextflow I get this error message:
N E X T F L O W ~ version 24.04.2
Nextflow DSL1 is no longer supported — Updat…