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Hi, thank you for developing this excellent software. I encountered an issue while running isoquant.py to analyze Oxford Nanopore data. Could you please let me know how to resolve it? I would greatly…
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Dear all users of decontam,
I am very new to this and i am having some issues with the processing of my data,
I have obtained a feature table using EPI2ME 16s Workflow.
But i dont have OTU i h…
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cc @turbomam
If we need to represent Illumina NovaSeq 6000 S4, I assume we would create a subclass of
id: OBI:0400043
name: flow cell
def: "Aparatus in the fluidic subsystem where the sheath…
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Oxford Nanopore has a very appealing amplicon-based, size-unrestricted sequencing application. I have CRISPResso2 tightly integrated into our core's operations, but methods used with CRISPResso2 aren'…
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Please, explain what read length should I use when running bracken on long read sequencing data
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**Format name:** < FAST5 >
**Short description:** < The FAST5 file format stores the raw electrical signal levels measured by the nanopores in flow cells for Oxford Nanopore Technologies sequencer…
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I recently started dipping my toes into published datasets from the Oxford Nanopore MinION sequencer. Their format is an hdf5 file, containing several types of metadata, "event data" (which is essenti…
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## Paste the link of the GitHub organisation below and submit
https://github.com/nanoporetech
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Hello,
Firts of all, I would like to express my appreciation for the development of AA. I have been using AA extensively, and it has been a crucial tool in my research.
I am planning to use Hi…
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I see you now have PromethION data for several of the individuals, available in fastq format. However, I don't see a link to the raw fast5. Is this available somewhere?