-
nf-core/mag v2.5.4-ge486bb2
Run Name: bq-mag19
nf-core/mag execution completed unsuccessfully!
The exit status of the task that caused the workflow execution to fail was: 2.
The full error messa…
-
### Description of the bug
I am running nf-core/mag 3.0.3 on a sample (ERR4303137) and it fails during the Prokka step.
This looks like it might be a simple fix (adding `--compliant --centre-nam…
-
Hi,
I've used the command snakemake -j 60 --use-conda to run bacLife but noticed prokka only uses 1 thread.
I checked the Snakefile and changed -cpus from 1 to 60:
rule Prokka_annotation:
…
-
Hello Biologger - your prior suggestion for Issue 15 was great and solved the problem I was running into. However, now when I run the version of the pipeline you suggested, I get the following error:
…
-
Getting an error on the following step, any help would be appreciated!
```
[66/af4c33] process > GAP:PROCESS_SINGLETON_GENOMES:PROKKA (MGYG000000010) [ 42%] 3 of 7, failed: 1
```
Error:
```
…
-
为什么conda死活安装不了prokka
-
Hi, the publication date of prokka is too long and the annotation efficiency is very poor. The author of prokka currently recommends using bakta, and the files generated by bakta are similar to those …
-
Dear all,
When I use the gbk result generated by the PROKKA software as an antismash input, the following warnings and errors are displayed:
```
WARNING 27/08 09:38:24 Regenerating translati…
-
Hi,
Thanks for your tools.
I had 2 problems before I got a complete job that i solved.
Unable to run with progressiveMauve version 2.4.0 but works with 2.3.1.
I added an new input argument to spec…
-
[20:16:13] appending to path: /usr/bin
[20:16:13] cleaning databases in /var/lib/prokka/db
[20:16:13] cleaning complete
.[20:16:13] looking for 'makeblastdb' - found /usr/bin/makeblastdb[20:16:13] …