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Hi there,
I'm new to proteomics analysis and R. I followed the tutorial on the website for the R package installation and completed the data entry. However, when I try to draw a heatmap with DEP2 …
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Most enrichment analysis tools are designed at the gene level and only support gene IDs.
The first step to performing GO analysis for proteomics data is to convert protein IDs to gene IDs and then…
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Greetings,
this does not warrant a PR, but here is a suggestion that might ease searching programs in desktop environment by entering key words (also added translations for languages I know).
[D…
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Cite the new [scp workflow](https://arxiv.org/abs/2310.13598) in the vignette.
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One of the changes in modeling in berkeley was to support projects that were had multiple instrument runs (of the same type) which should be analyzed together. Records are linked with part_of, for the…
aclum updated
7 hours ago
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/Vitek-Lab/MSstatsBioNet
Confirm the following by …
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I recently began using the Linux platform for work. I considered using our server, which is running Ubuntu 22.04.4 LTS, to run DIA-NN.
_I installed .deb version._ I converted .wiff to .mzml and kept …
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This issue is to provide a shared space (a bit more structure than slack) for all the members of the community working on tidy adapters/analysis frameworks for proteomics/metabolomics/mass spectroscop…
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Hi Fengchao,
I am working on proteomics data using FragPipe (with IonQuant) and processing a dataset of 1392 mzML files. The analysis proceeds smoothly until IonQuant runs into an out-of-memory err…
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# Abstract
Cytoscape is an open-source software to visualize and analyze biological networks. Developers can add new features to Cytoscape by developing their own Java-based apps by utilizing the C…