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Hello,
I'm encountering an issue when trying to convert a Bruker file using the Timsconvert Docker version. The process starts, but no output is generated.
### Steps to Reproduce:
1. I run the …
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Greet Job! Colina and Yixuan
Fascinating Aspects
1. Biological Focus on H2AFY: Your choice to focus on H2AFY as a histone variant due to its known role in chromatin remodeling, gene regulation, a…
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Most enrichment analysis tools are designed at the gene level and only support gene IDs.
The first step to performing GO analysis for proteomics data is to convert protein IDs to gene IDs and then…
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Hi,
Could the protein abundance values shown in the ‘Results’ tab for DDA (Data Dependent Analysis) proteomics baseline experiments include **ppb** (parts per billion) as the unit displayed next to…
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@fuerzhou Thanks for putting in so much work on spatial data analysis!
I am trying to process my spatial proteomics dataset, which consists of over 150 processed IMC images. Therefore my anndata ob…
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Dear all
I am seeking your expertise in analyzing my proteomics data. To enhance the coverage of my dataset, I performed Ph fractionation and subsequently injected the fractions separately. As a re…
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is:issue is:open can we use cellphonedb for proteomic data analysis. i have relative abudance of proteins among different samples (cells from different tissues.
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Hi there,
I'm new to proteomics analysis and R. I followed the tutorial on the website for the R package installation and completed the data entry. However, when I try to draw a heatmap with DEP2 …
EEnim updated
3 months ago
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Hi,
When running test_diff the order of factors/covariates in the design matrix affects the final analysis.
I have put this issue up on BioStars: https://www.biostars.org/p/9588610/#9602501 and …
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We support a Contribution Annotation Framework that allows us to indicate roles of conributors. However, many tutorials still use the "old" style contribution metadata (without roles)
Updating this…