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Hi,
I'm wondering if it's possible to use NanoMethViz to visualise RNA methylation data, e.g. using methylation probability output from m6Anet? Especially as ONT are now including m6A base-calling …
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We know we are moving forward with RNA-seq, and I think it would be beneficial to rank priorities on other analyses:
Here is a non exhaustive ranked list to start with but would like to get more op…
sr320 updated
3 weeks ago
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Preferred Term: single-nucleus methylcytosine and transcriptome sequencing assay
Synonyms: snmCT-seq
Definition: A multiomic method to measure the cytosine DNA methylation and gene expression signat…
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Dear Peng,
I wonder if it is possible to use Deepsignal to detect methylations in RNA from samples sequenced by the direct RNA sequencing kit from ONT.
I think about training a model by using comp…
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I have been using TEcount for estimating TEs in total RNA-seq data which has worked great. However, I want to combine this with methylation data and there we have methylation differences at the transc…
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Hi Yasin,
I am trying the Maple package on new data, and just wondering is there any code support to re-train and test the model on new dataset in general.
Thank you!
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Hello,
I have another question concerning this pipeline.
The m6A accessibility and level are calculated using in vitro samples : do you think it is possible to estimate the m6A accessibility in a…
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Hi,
i am wondering how good is xpore detect other RNA modification like ψ and ADP-ribosylation or is it mainly designed for m6A/RNA methylation?
Thanks in advance!
Yun
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* **Term to be merged: Provide GO ID and term label**
GO:0106005 RNA 5'-cap (guanine-N7)-methylation
GO:0036265 RNA (guanine-N7)-methylation
* **Which term do you propose this term merge int…
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