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Hi ,
I’m working with scBasset and wanted to ask how the ad_rna_annotate.h5ad file is generated. Could you briefly explain the main steps, including any preprocessing or annotations, and the tools/…
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Hi!
**In the SAM tags, are m5C and m6A RNA modifications represented as "m" and "a," respectively? Is this the same for BAM files?**
While using Dorado for methylation detection on my DRS data, I …
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Hi,
First, apologies if this is not the best place to ask this question. I'm doing gene annotation for a non-model rodent, and I have tried several approaches:
1. BRAKER2: with a large protein dat…
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Hi:
I use this tools at default paramters by running the code below
`multiplet_classification, consistency = RNA_modality.composite_rna("RNA.mtx")`
The RNA.mxt is the default output of 10x cell…
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I am following [this tutorial](https://kzhang.org/SnapATAC2/tutorials/modality.html) to jointly embed my single-nucelus multiome capture from 10X. I have already filtered both RNA and ATAC objects to …
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Add these to the pipeline:
RNA-SeQC: https://software.broadinstitute.org/cancer/cga/rnaseqc_run
DNA: Picard alignment summary
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Hi @zwanli ,
Considering issue https://github.com/bgruening/galaxytools/issues/507 , we can think of extending RNAsnp and remuRNA wrappers to support multi sequences and snp-tags, e.g. support two ty…
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你好,我在运行dnbc4tools rna run遇到以下报错:
运行的代码是:
dnbc4tools rna run --name scRNA_pool6 --cDNAfastq1 /home/data/t020559/DNBelab_test/PRJCA021248/st1_data/HRR1445549_f1.fq.gz --cDNAfastq2 /home/data/t020559/D…
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```
rna_pdb_tools.py --rpr 1ehz.pdb --replace-hetatm
Traceback (most recent call last):
File "/Users/magnus/miniconda3/bin/rna_pdb_tools.py", line 7, in
exec(compile(f.read(), __file__, 'ex…