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calico
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scBasset
Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.
Apache License 2.0
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How is the ad_rna_annotate.h5ad file generated?
#26
gaoxiangcao
opened
1 month ago
1
peak matrix binarized?
#25
simon-anders
closed
1 month ago
2
why multi_label=True?
#24
Miaoyuanyuan777
opened
6 months ago
3
pbmc_multiome data
#23
wawpaopao
opened
8 months ago
1
Enquiry about the evaluation code
#22
EddieBio
closed
1 month ago
1
Issues with motif scoring
#21
anu-bioinfo
closed
9 months ago
2
Importing schasset
#20
sidrahmaryam-cyber
closed
1 year ago
0
imputation_Y_normalize: typo in help (scale_method='positive')
#19
s-aibar
closed
1 year ago
1
Implementation in scvi-tools
#18
adamgayoso
closed
9 months ago
1
How does StochasticShift(3) work? Isn't 3bp a very small shift?
#17
vitkl
closed
1 year ago
4
Versions in requirements
#16
suragnair
closed
1 year ago
1
Mouse brain dataset processing
#15
fym0503
closed
1 year ago
2
batch size specified but never used
#14
AlphaGergedan
closed
2 years ago
0
Inquiry about scVI result
#13
fym0503
closed
1 year ago
0
I got this this error when I run the program ('scbasset_preprocess.py --ad_file h7.h5ad --input_fasta genome.fa --out_path preprocess')
#12
kongfuwz
closed
2 years ago
3
Question about Neighborhood Score
#11
fym0503
closed
2 years ago
7
example，cell_embeddings
#10
lihaicheng7003
closed
2 years ago
5
Tutorial data
#9
fym0503
closed
2 years ago
1
Fasta file
#8
fym0503
closed
2 years ago
1
Tensorflow and Keras version?
#7
cervenku
closed
2 years ago
1
batch correction scBassset-BC
#6
willey2020
closed
2 years ago
5
analyzing motif
#5
willey2020
closed
9 months ago
10
Question : motif scoring ad_rna annotation
#4
haroldsnyers
closed
2 years ago
0
Installing scBasset
#3
sanghoonleeeins
closed
2 years ago
1
testing non-10X data set?
#2
willey2020
closed
2 years ago
6
Can scBasset apply on variants prioritization across different cells?
#1
GuangshengPei
closed
2 years ago
1