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Hi:
Thanks for the package uploaded. I would like to learn whether it is possible to return the weight of each sequence (Then we know which sequences play an important role in our sample level pred…
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This would be one way to integrate consideration of TCR repertoire data. If a user has TCR data from TILs say, they could use TCRMatch to further prioritize candidates where TCRMatch reports a hit in…
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Integrated data/metadata in the AK are complete and accurate and that integrated datasets returned from the query API are complete, accurate, and compliant with our adopted standards. An example of cr…
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## 🐛 Bug
- **10X Cellranger:**
Chemistry Single Cell V(D)J R2-only
V(D)J Reference vdj_GRCm38_alts_ensembl-4.0.0
Pipeline Version cellranger-5.0.1
- **R-4.2.0 and package installatio…
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Hi all,
Thanks for developing this very interesting and useful package.
Am I correct in assuming there is no compatibility with demultiplexing cell hash data with TCR repertoire analysis (10x) …
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Hi, can immunarch read in repertoire data that has been outputted from the CLC Workbench from Qiagen (https://digitalinsights.qiagen.com/products-overview/discovery-insights-portfolio/analysis-and-vis…
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Hi,
I was wondering whether there is a function inside vegan for calculating the Gini coefficient, as this is another diversity metric that is used a lot for TCR/BCR repertoire analysis?
Many th…
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Hi there,
I've recently started using scirpy for TCR analyses. For the repertoire overlap, the scipy distances are the only available scores it seems (with Jaccard being the default one).
Do you…
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Thanks for nice job, well done 👍
Naive question, I'm running nanopore at the single cell level, feeding it to the trust 4 to find TCR BCR receptors repertoire, my question is all BCR or TCR s are not…
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[Chen G, Yang X, Ko A, Sun X, Gao M, Zhang Y, Shi A, Mariuzza RA, Weng NP. Sequence and Structural Analyses Reveal Distinct and Highly Diverse Human CD8+ TCR Repertoires to Immunodominant Viral Antige…