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AlexanderLabWHOI
/
eukrhythmic
A metatranscriptomic pipeline optimized for the study of microeukaryotes.
MIT License
15
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Random version-ing issues
#79
halexand
opened
1 week ago
3
Couple things
#78
cnatalie
closed
6 months ago
2
Rules
#77
cnatalie
closed
7 months ago
1
Eukrhythmic command not working
#76
dhwanidesai
opened
8 months ago
0
Syntax corrections 1-4
#75
kbdilliplaine
opened
10 months ago
0
Spark Plugs
#74
halexand
opened
1 year ago
1
Upgrades to v2
#73
halexand
opened
1 year ago
1
added biopython
#72
halexand
opened
1 year ago
0
Add BioPython as a required package to environment file
#71
halexand
opened
1 year ago
0
Salmon subsetting
#70
halexand
opened
1 year ago
0
Clean up final clustered fasta headers
#69
halexand
opened
1 year ago
0
Clustering in protein space
#68
halexand
opened
1 year ago
0
Updating documentation
#67
akrinos
closed
2 years ago
0
Updating documentation
#66
akrinos
closed
2 years ago
0
New workflow
#65
akrinos
closed
2 years ago
1
Fixing RiboDetector rules
#64
akrinos
closed
2 years ago
1
re-removing ruleorder directives that are no longer relevant
#63
akrinos
closed
2 years ago
0
adding ribotagger optional rule
#62
akrinos
closed
2 years ago
0
Adding in some changes to shell script and setup
#61
akrinos
closed
2 years ago
0
Fixing merging
#60
akrinos
closed
2 years ago
0
Fixing merging
#59
akrinos
closed
3 years ago
0
Making modifications to transabyss and mmseqs rules
#58
akrinos
closed
3 years ago
0
Forgot to merge in changes to checkrequirements.py
#57
akrinos
closed
3 years ago
0
Modules folder
#56
MichielPerneel
opened
3 years ago
5
hmmsearch
#55
cnatalie
opened
3 years ago
0
Moving to Snakemake-compliant workflow
#54
akrinos
closed
3 years ago
0
Fixing merging
#53
akrinos
closed
3 years ago
0
Hmmer logs
#52
cnatalie
opened
3 years ago
0
Build in some sort readmapping parsing
#51
halexand
opened
3 years ago
1
How are isoforms handled?
#50
halexand
opened
3 years ago
1
Suggestions for annotations
#49
cnatalie
opened
3 years ago
0
Typo in mmseqs linclust
#48
cnatalie
opened
4 years ago
0
Adding in mmseqs rule after code check
#47
akrinos
closed
4 years ago
0
Different levels of clustering
#46
akrinos
opened
4 years ago
0
Documentation notes
#45
akrinos
closed
1 year ago
0
Change output organization
#44
akrinos
opened
4 years ago
1
Changing clustering to MMSeqs2
#43
akrinos
closed
1 year ago
0
Fixing merging
#42
akrinos
closed
4 years ago
0
Annotation rule logs
#41
cnatalie
closed
1 year ago
0
Pbs draft add in?
#40
halexand
opened
4 years ago
0
adding docs to commit
#39
akrinos
closed
4 years ago
0
Adding separate rules, new submit script, and updated docs
#38
akrinos
closed
4 years ago
0
Finally adding in this new organization structure to master
#37
akrinos
closed
4 years ago
0
Integrating with PBS as well as slurm?
#36
halexand
closed
1 year ago
1
metaT sample file naming
#35
cnatalie
closed
4 years ago
3
merged files are not renamed
#34
cnatalie
closed
4 years ago
1
Merging in changes to SLURM params, log files, README
#33
akrinos
closed
4 years ago
0
Merging in changes related to merging quast files & labeling logs
#32
akrinos
closed
4 years ago
0
duplicate logs
#31
cnatalie
closed
4 years ago
2
Strange behavior with `megahit` rule
#30
halexand
closed
4 years ago
2
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