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BCCDC-PHL
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auto-cpo
Automation of Genomic Analyses for Carbapenemase-Producing Organisms (CPOs)
GNU General Public License v3.0
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Add QC filters for hybrid analysis, incorporating metrics from short & long reads
#20
dfornika
opened
1 day ago
0
Add support for `short` and `hybrid` analysis modes
#19
dfornika
closed
2 days ago
0
Write outputs to `short` or `hybrid` sub-directories, depending on analysis mode.
#18
dfornika
closed
2 days ago
0
Update README and config template
#17
dfornika
closed
1 week ago
0
renamed analyze_run to run_pipeline
#16
dfornika
closed
1 week ago
0
Add notification emails using the "MCMS Messaging" system
#15
dfornika
opened
1 week ago
0
Implement separate pre and post analysis stages for each pipeline
#14
dfornika
closed
1 week ago
0
Add pre-analysis and post-analysis phases for each pipeline.
#13
dfornika
closed
1 week ago
0
Check for specific analysis output mode when deciding whether to analyze run
#12
dfornika
opened
4 months ago
0
KeyError while preparing assembly SampleSheet
#11
dfornika
opened
10 months ago
0
Add basic-sequence-qc and begin implementing QC filtering
#10
dfornika
closed
11 months ago
0
Add QC checks
#9
dfornika
closed
11 months ago
1
Fix est read length
#8
dfornika
closed
1 year ago
0
`estimate_read_length` may fail
#7
dfornika
closed
1 year ago
1
Adjust various report filenames, output dirs
#6
dfornika
closed
1 year ago
0
Include pipeline name in work directory
#5
dfornika
closed
1 year ago
0
Store short-read analysis in sub-directory named "short"
#4
dfornika
closed
1 year ago
0
Support three assembly modes: short, long, and hybrid
#3
dfornika
opened
1 year ago
1
Add config option to analyze runs in reverse order
#2
dfornika
closed
1 year ago
0
Add option to analyze runs in reverse order
#1
dfornika
closed
1 year ago
0