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BenLangmead
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bowtie
An ultrafast memory-efficient short read aligner
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bowtie for short reads
#141
alessandromacc
opened
2 months ago
1
bowtie alignmnet produces sam bam files sizes for different fastq files
#140
deepthi-omics
opened
4 months ago
0
secondary alignment flag
#139
adthrasher
opened
11 months ago
0
Compatibility of Bowtie1 (v1.2.0 or later) with Tophat2
#138
rason81
opened
1 year ago
1
Is there an equivalent of "Bowtie2 --very-sensitive" for Bowtie1 [suggested label = Question]
#137
AndreaMariani-AM
opened
1 year ago
0
Cline paired 2 (fw:1, sam:1) test aborted with -Wp,-D_GLIBCXX_ASSERTIONS
#136
junaruga
opened
1 year ago
4
Some reference entries show up as duplicates
#135
DeadlineWasYesterday
opened
2 years ago
1
Questions about tracking the history of building index
#134
Youpu-Chen
opened
2 years ago
0
-m setting not outputting a sam file with an -NH tag
#133
elayton13
opened
2 years ago
0
Remove '.' from include path search.
#132
tjni
opened
2 years ago
0
Fix compilation on arm64.
#131
tjni
opened
2 years ago
1
Bowtie not mapping 100%
#130
Stakaitis
closed
2 years ago
1
Error: reads file does not look like a FASTQ file
#129
amitjavilaventura
opened
2 years ago
2
Bowtie no longer works with updated versions of tbb
#128
ryandward
opened
2 years ago
0
XM:i SAM Optional field ... seems like hits + 1 for all hits?
#127
MikeAxtell
closed
3 years ago
3
problem with option -n and -l
#126
mewu3
opened
3 years ago
0
-M option reports the wrong number of reads processed
#125
dominik-handler
closed
3 years ago
2
Bowtie hangs when running on very large genomes
#124
ferayd
closed
3 years ago
8
Mismatch flag
#123
KONeill872
closed
3 years ago
0
bowtie install error on Apple M1
#122
hidvegin
closed
3 years ago
1
Website updates
#121
BenLangmead
opened
3 years ago
0
Migrate Travis CI by May 31, 2021
#120
junaruga
opened
3 years ago
0
bowtie 1.3.0 generated sam files error
#119
hidvegin
closed
3 years ago
11
Bowtie: "Floating point exception: 8"
#118
marcopann
opened
3 years ago
1
What is the sense of third_party/cpuid.h
#117
tillea
closed
3 years ago
2
scripts/tests/large_idx.py: #! python -> python3
#116
smoe
opened
4 years ago
0
DeprecationWarning: the imp module is deprecated
#115
junaruga
closed
4 years ago
2
s390x/ppc64le: bt2_locks.h: Error: Unrecognized opcode: `pause'
#114
junaruga
closed
3 years ago
6
Can bowtie accepts genomes higher than 3Gb for aligning?
#113
AG-Run
opened
4 years ago
0
Special characters in manual
#112
BenLangmead
opened
4 years ago
0
bowtie-build --debug --sanity crashes
#111
BenLangmead
opened
4 years ago
0
Install bowtie
#110
paolabc
closed
2 years ago
1
Code clean up?
#109
mathog
opened
4 years ago
4
bowtie-align-l-debug fail
#108
bensonlew
closed
4 years ago
0
Unmapped reads not suppressed using --no-unal and possibly wrong stderr stats
#107
bepoli
closed
4 years ago
2
SeqAn license info is not enough?
#106
junaruga
closed
4 years ago
4
Update to seqan 1.4.2
#105
junaruga
closed
4 years ago
3
Invalid double quote character is used in the code
#104
junaruga
closed
4 years ago
3
bowtie reports incorrect result when using bowtie2 index
#103
qifei9
closed
3 years ago
3
Add aarch64, ppc64le and s390x cases to Travis CI
#102
junaruga
closed
4 years ago
16
Renaming the v1.2.3 src archive to "bowtie-1.2.3-src.zip"?
#101
junaruga
closed
3 years ago
4
Missing newlines in --max and --un output files
#100
ferayd
closed
4 years ago
18
Allow to override build date and host
#99
bmwiedemann
closed
4 years ago
1
Get decoded content of index files
#98
lazovicff
closed
4 years ago
1
Please update scripts using python to python3
#97
mestia
closed
3 years ago
1
Axolotl genome index building with Bowtie 1.2.3
#96
Gil-marquez
closed
3 years ago
3
Makefile alphabet.cpp
#95
xusailor
opened
5 years ago
4
The -m option only results in some "many mapped" reads being supressed
#94
Riptides
opened
5 years ago
0
bowtie with recent SeqAn
#93
mestia
closed
3 years ago
3
Bowtie clips read before matching
#92
ferayd
closed
5 years ago
4
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