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BergmannLab
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MONET
MONET : MOdularising NEtwork Toolbox - https://doi.org/10.1093/bioinformatics/btaa236
GNU General Public License v3.0
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Error in output[[i]] : subscript out of bounds
#58
di-mendes
opened
1 year ago
1
Hard-coded file paths
#57
FelixTheStudent
opened
1 year ago
0
MONET.K1
#56
hadicharati
opened
2 years ago
0
Single nodes in the cluster
#55
Jordi-V
opened
2 years ago
4
maximum number of genes in cluster for K1
#54
jpinero
opened
2 years ago
3
Positive and negative weights
#53
JoseAML
closed
2 years ago
5
This should fix the "problem too large" error when the problem is not large.
#52
WeijiaZhang24
closed
2 years ago
0
R1 clustering in MONET dosent work
#51
Jordi-Valls
opened
3 years ago
5
adding python 2 library versions and commenting on monet bash functio…
#50
samanfrm
closed
3 years ago
0
Docker on Mac OS X: no "successfully built" line
#49
jjc2718
closed
3 years ago
4
K1: specify igraph version for Python 2 compatibility
#48
jjc2718
closed
3 years ago
0
Error: building k1-image
#47
ngerstner
closed
3 years ago
2
Error in K1: change of pip's URL
#46
ewysocka
opened
3 years ago
1
Error: docker not installed
#45
nebfield
closed
3 years ago
3
ERROR: docker build returned an error
#44
ewysocka
closed
3 years ago
3
ERROR with docker version: 20.10.1 on Ubuntu 20.04 LTS
#43
ewysocka
closed
3 years ago
2
Error: file 'input.txt' not found
#42
abrantesas
closed
3 years ago
2
K1 - disconnected nodes in a cluster
#41
ewysocka
closed
3 years ago
5
Docker build returned an error
#40
XscapeCn
closed
3 years ago
1
What does the --largest mean?
#39
hui-liu
opened
3 years ago
1
M1 method not using --smallest parameter
#38
clescoat
opened
4 years ago
1
fix K1 container image version
#37
Zolikazer
closed
4 years ago
0
manual install
#36
gianfilippo
closed
4 years ago
3
Cytoscape Input
#35
zebasilio
opened
4 years ago
4
changed confidence level of output to 1.0
#34
mattiat
closed
4 years ago
1
Issues 15
#33
mattiat
closed
4 years ago
0
set numerical separator in result-modules output file to 1.0
#32
mattiat
closed
4 years ago
9
Issues 20
#31
mattiat
closed
4 years ago
0
fixed issues_20
#30
mattiat
closed
4 years ago
0
Allow running Docker without sudo
#29
prihoda
opened
4 years ago
4
moving platform specific tests
#28
mattiat
closed
4 years ago
0
hiding sensitive directories and files
#27
mattiat
closed
4 years ago
0
hide containers/src folers and monet executable
#26
mattiat
closed
4 years ago
1
improve error message when R1 fails because of lack of RAM resources
#25
mattiat
opened
4 years ago
0
K1: add number of clusters as command line parameter
#24
jjc2718
closed
4 years ago
1
reinstaller hangs
#23
mattiat
closed
4 years ago
1
add a spinner when user is waiting
#22
mattiat
opened
4 years ago
1
How to modify the target module number for K1?
#21
FenghuJi
closed
4 years ago
2
R1 error on small input: subscript out of bounds
#20
mattiat
closed
4 years ago
7
K1 error on small input: n_samples should be >= n_clusters
#19
mattiat
closed
4 years ago
0
improve the README file
#18
mattiat
closed
4 years ago
1
R1 parameters: improve help and documentation.
#17
mattiat
closed
4 years ago
1
M1 implictly assumes networks with > 100 nodes
#16
sergio-gomez
closed
4 years ago
2
R1 method using default parameters fail with error 'problem too large'
#15
cristian931
opened
4 years ago
10
K1 can fail without returning an error
#14
mattiat
closed
4 years ago
1
adding a check to prevent monet from being invoked directly...
#13
mattiat
closed
4 years ago
0
prevent execution of MONET's main script directly (i.e. without installation)
#12
mattiat
closed
4 years ago
1
gene-level module membership score
#11
mattiat
opened
4 years ago
4
Add parameters to M1
#10
sergio-gomez
closed
4 years ago
0
Ctrl-C does not stop monet
#9
mattiat
opened
4 years ago
5
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