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BigDataBiology
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argNorm
ARG normalization by mapping to the ARO ontology.
MIT License
21
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4
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DOC add link to funcscan
#67
Vedanth-Ramji
closed
1 week ago
0
Update docs for v0.6.0
#66
Vedanth-Ramji
closed
2 weeks ago
0
ADD code to give percentages & frequencies of perfect, strict, and loose hits
#65
Vedanth-Ramji
closed
2 weeks ago
0
Update SARG db link in crude_db_harmonisation
#64
Vedanth-Ramji
closed
2 weeks ago
0
RFCT remove groot_ref_db parameter in map_to_aro
#63
Vedanth-Ramji
closed
3 weeks ago
0
ADD groot ARO mapping
#62
Vedanth-Ramji
closed
1 month ago
0
ADD raw & hamronized example groot outputs to test groot normalizer
#61
Vedanth-Ramji
closed
1 month ago
1
ADD groot normalizer
#60
Vedanth-Ramji
closed
3 weeks ago
5
Option to summarize multiple tool outputs into a single report
#59
Matt-BF
opened
1 month ago
1
DOC add nf-core module installation
#58
Vedanth-Ramji
closed
2 months ago
0
ENH load CARD v3.2.9 when using RGI
#57
Vedanth-Ramji
closed
3 weeks ago
0
ENH handle AROs as string rather than int in get_aro_mapping_table()
#56
Vedanth-Ramji
closed
2 months ago
2
Updated manual curation for misannotated genes
#55
Vedanth-Ramji
closed
2 months ago
1
ENH Update drug categorization logic
#54
Vedanth-Ramji
closed
2 months ago
0
ADD use all parents for gene to drug mapping
#53
Vedanth-Ramji
closed
2 months ago
0
BUG manually curate misannotated gene
#52
Vedanth-Ramji
closed
2 months ago
0
ENH Update drug categorization logic
#51
Vedanth-Ramji
closed
2 months ago
0
Remove duplicate mappings & sort megares_ARO_mapping
#50
Vedanth-Ramji
closed
2 months ago
1
DOC Update changelog with adding missing manual curtion & case-independent inputs on command-line
#49
Vedanth-Ramji
closed
3 months ago
0
ADD missing ARO mappings to manual curation
#48
Vedanth-Ramji
closed
3 months ago
4
DOC improve index.md
#47
Vedanth-Ramji
closed
3 months ago
0
ENH specific version for NCBI in db_harmonisation & clean up harmonisation code
#46
Vedanth-Ramji
closed
3 months ago
0
ENH Improve MEGARes Mappings
#45
Vedanth-Ramji
closed
3 months ago
0
Update test_lib.py
#44
sebastianLedzianowski
closed
3 months ago
0
Update cli.py
#43
sebastianLedzianowski
closed
3 months ago
3
ENH handle mapping not in ARO in map_to_aro function & simplify map_to_aro() code
#42
Vedanth-Ramji
closed
4 months ago
0
Update requirements.txt
#41
sebastianLedzianowski
closed
4 months ago
2
argNorm should accept inputs in case-independent way (on command line)
#40
luispedro
closed
2 months ago
2
DOC: Improve documentation for v0.3.0
#39
Vedanth-Ramji
closed
4 months ago
0
ADD: cluster and reverse complement correction for resfinder
#38
Vedanth-Ramji
closed
4 months ago
3
Document argannot amino acid file update in changelog
#37
Vedanth-Ramji
closed
4 months ago
0
ENH Get amino acid file for argannot rather than nucleotide file
#36
Vedanth-Ramji
closed
4 months ago
3
ENH update conda install command to make sure conda-forge is used
#35
Vedanth-Ramji
closed
5 months ago
0
AttributeError: module 'collections' has no attribute 'Mapping'
#34
VittoriaOssanna
opened
5 months ago
6
ADD docs for conda installation
#33
Vedanth-Ramji
closed
5 months ago
0
ADD resfinderfg integrated with normalizers
#32
Vedanth-Ramji
closed
5 months ago
0
ENH Update argannot to V6
#31
Vedanth-Ramji
closed
5 months ago
0
BUG duplicated resfinder fixed
#30
Vedanth-Ramji
closed
5 months ago
2
DOC improve index.md
#29
Vedanth-Ramji
closed
3 months ago
1
ADD lib.py to make argnorm usable as a library
#28
Vedanth-Ramji
closed
4 months ago
2
ENH Remove warnings, add db validation for AbricateNormalizer, add file being normalized in CLI msg.
#27
Vedanth-Ramji
closed
5 months ago
0
DOC added argNorm workflow figure
#26
Vedanth-Ramji
closed
5 months ago
2
ADD Update documentation
#25
Vedanth-Ramji
closed
5 months ago
0
ENH Update drug categorization to use drug categories of superclasses.
#24
Vedanth-Ramji
closed
5 months ago
0
ENH Updated manual curation for latest RGI
#23
Vedanth-Ramji
closed
5 months ago
1
ENH Update pytest tests & add integration tests
#22
Vedanth-Ramji
closed
5 months ago
0
Improved testing
#21
Vedanth-Ramji
closed
5 months ago
0
Improved Testing
#20
Vedanth-Ramji
closed
5 months ago
0
Correct mappings
#19
Vedanth-Ramji
closed
5 months ago
0
Corrected mappings to match output of crude_db_harmonisation.py
#18
Vedanth-Ramji
closed
5 months ago
1
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