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BinPro
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CONCOCT
Clustering cONtigs with COverage and ComposiTion
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Performance of the latest version
#234
bioinformatist
closed
5 years ago
5
By default, use all available threads
#233
alneberg
closed
4 years ago
5
endless OpenBLAS Warning
#232
kodragonP
closed
4 years ago
60
Fix warnings regarding the .ix depreciation
#231
alneberg
closed
5 years ago
0
Install fix for macos
#230
alneberg
closed
5 years ago
0
FileNotFoundError: [Errno 2] No such file or directory: 'samtools': 'samtools'
#229
alneberg
closed
5 years ago
2
Comment about map-bowtie2-markduplicates.sh line 110
#228
franciscozorrilla
closed
4 years ago
5
Problem with installation by conda
#227
bioinformatist
closed
5 years ago
10
error running concoct test
#226
madhubioinfo
closed
5 years ago
6
Version 1.0.0
#225
alneberg
closed
5 years ago
3
Question about running concoct: Large co-assembly vs multiple sample-based assemblies
#224
franciscozorrilla
closed
4 years ago
18
Merging master into develop and prepare for new release
#223
alneberg
closed
5 years ago
0
Scripts to avoid mapping against cut-up contigs
#222
alneberg
closed
5 years ago
0
how to install SpeedUp_MP branch?
#221
kodragonP
closed
5 years ago
4
Version 0.4.2
#220
alneberg
closed
5 years ago
0
Avoid cutting up contigs
#219
alneberg
closed
5 years ago
6
Support gzipped input fasta and table
#218
alneberg
opened
5 years ago
0
Error with extract_fasta_bins.py
#217
dayuzou
closed
5 years ago
4
Depreciated pandas method .ix
#216
alneberg
closed
5 years ago
0
2to3
#215
alneberg
closed
5 years ago
0
Questions: concoct_inputtable.tsv has all zeros, megahit options, checking .bam files
#214
franciscozorrilla
closed
5 years ago
3
scikit-learn dependencies in devel branch
#213
defleury
closed
5 years ago
1
Confirm that use of BLAST's `-max_target_seqs` is intentional
#212
armish
opened
5 years ago
0
High read abundance but no bins
#211
zahidrehman
closed
4 years ago
3
Question about Validation using single-copy core genes
#210
franciscozorrilla
closed
5 years ago
2
Format of cluster file with linkage information
#209
jfrank87
closed
4 years ago
1
Enable proper pip install
#208
alneberg
closed
4 years ago
1
Improved docker
#207
alneberg
closed
5 years ago
1
Silently ignore COGs we don't know about!
#206
linsalrob
closed
5 years ago
3
Question about parameter used in complete example
#205
franciscozorrilla
closed
5 years ago
3
Extracting bins returns an error (KeyError)
#204
gelomerase
closed
5 years ago
2
Improvements to the gen_input script
#203
alneberg
closed
4 years ago
1
Numpy/pandas warnings: RuntimeWarning: numpy.dtype size changed
#202
alneberg
closed
4 years ago
3
More Parallel CONCOCT
#201
alneberg
closed
5 years ago
3
Add tests for gzipped input fasta
#200
alneberg
opened
5 years ago
0
Extract bins as fasta from the main tool
#199
alneberg
opened
5 years ago
1
Maintain the tutorial
#198
alneberg
opened
5 years ago
4
Should work on python 3
#197
alneberg
closed
4 years ago
1
Output most of the old output files
#196
alneberg
opened
5 years ago
0
CONCOCT bins are not complete and contaminated
#195
zahidrehman
closed
5 years ago
1
Example of concoct workflow
#194
johanneswerner
closed
4 years ago
2
Questions about Validate.pl output and Cluster plot
#193
franciscozorrilla
closed
5 years ago
4
Using cut_up_fasta.py results in output file with many small nodes
#192
franciscozorrilla
closed
6 years ago
2
issue about clustering_gt1000_l.csv
#191
Shirley-Q
closed
4 years ago
1
Bug with RPSBLAST.sh
#190
campy1113
closed
6 years ago
2
Instalation issue
#189
luhugerth
closed
6 years ago
5
cut_up_fasta.py error
#188
nafeesatk
closed
6 years ago
1
Concoct run doesn't end?
#187
rotoscan
closed
4 years ago
3
issues about concoct
#186
Shirley-Q
closed
4 years ago
11
clustering_gt1000.csv contigs suffixed with .0, .1, ...
#185
ghost
closed
4 years ago
1
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