issues
search
BinPro
/
CONCOCT
Clustering cONtigs with COverage and ComposiTion
Other
125
stars
48
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Converting jgi_summarize_bam_contig_depths output files into the concoct_coverage table
#286
franciscozorrilla
closed
4 years ago
1
fix issue 171, to make script work with ambiguous bases by ignoring them
#285
openpaul
closed
10 months ago
0
added 5th argument for vbgmm, using .values
#284
Sebastien-Raguideau
opened
4 years ago
0
Need for cutting contigs in pieces?
#283
jtamames
closed
4 years ago
4
Ensure that IDs are read as strings
#282
linsalrob
opened
4 years ago
0
extract_fasta_bins with numeric contig IDs
#281
linsalrob
opened
4 years ago
0
Update parser.py to be more verbose
#280
jungbluth
closed
5 years ago
0
concoct on long reads and hybrid assemblies
#279
MChiaraC
closed
5 years ago
1
panda reindex errors
#278
josieparis
closed
5 years ago
4
ERROR: fail to open index BAM file
#277
SarahIsme
opened
5 years ago
8
The necessity of dereplicating PCR duplication
#276
Duannai
opened
5 years ago
0
The Error: TypeError: expected a string or other character buffer object
#275
SarahIsme
opened
5 years ago
1
merge_cutup_clustering is not merging
#274
Aline-Git
closed
5 years ago
1
Coverage calculation from kallisto
#273
adityabandla
closed
5 years ago
4
concoct_refine fails under pandas 0.25.1 and numpy 1.17.2
#272
Sebastien-Raguideau
opened
5 years ago
4
Pre-assembly binning?
#271
franciscozorrilla
closed
3 years ago
3
Using CONCOCT to determine coverage of specific predicted ORFs in multiple samples
#270
slvrshot
closed
5 years ago
1
fix use of deprecated API
#269
sjaenick
closed
5 years ago
0
Prepare version 1.1.0
#268
alneberg
closed
5 years ago
0
Doc update
#267
alneberg
closed
5 years ago
0
Updated changelog
#266
alneberg
closed
5 years ago
0
Warning if single-threaded
#265
alneberg
closed
5 years ago
0
Enforcing correct input for some scripts
#264
alneberg
closed
5 years ago
0
Bugfix for the new documentation
#263
alneberg
closed
5 years ago
0
Major update to documentation
#262
alneberg
closed
5 years ago
0
Removed the unused epsilon argument
#261
alneberg
closed
5 years ago
0
Added integration test data to the dockerfile build
#260
alneberg
closed
5 years ago
0
Changelog
#259
alneberg
closed
5 years ago
0
Tests for complete basic workflow and bugfixes
#258
alneberg
closed
5 years ago
0
More tests and bugfixes
#257
alneberg
closed
5 years ago
0
More tests!
#256
alneberg
closed
5 years ago
0
More stable suffix for cutup contigs
#255
alneberg
closed
5 years ago
0
Concoct refine bugfix
#254
alneberg
closed
5 years ago
0
A dockerfile that can be used to test installation of concoct
#253
alneberg
closed
5 years ago
0
ImportError: cannot import name GMM
#252
jolespin
closed
5 years ago
1
CONCOCT results discussion
#251
franciscozorrilla
closed
5 years ago
3
Error while running Concoct_covergae_table.py
#250
dannyionescu
closed
5 years ago
7
KeyError when using fasta_to_features.py
#249
Ash1One
closed
5 years ago
2
issue between concoct_refine and fit function
#248
ldumond
closed
5 years ago
1
CONCOCT v1.0 performance dip in metaWRAP environment
#247
ursky
closed
5 years ago
9
Fix dependency problems where python 2 might not be supported anymore
#246
alneberg
closed
5 years ago
0
error with concoct （1.0.0）
#245
ucassee
closed
5 years ago
16
running time
#244
ucassee
closed
5 years ago
6
concoct_refine fails under python3
#243
snurk
closed
5 years ago
3
Make all scripts agnostic of header line on clustering files
#242
alneberg
closed
5 years ago
0
Bin 0 not analyzed in Checkm
#241
choosehappy
closed
5 years ago
22
CheckM evaluation of CONCOCT-test-data-0.3.2/
#240
franciscozorrilla
closed
5 years ago
3
Arguments not longer used
#239
alneberg
closed
5 years ago
3
Question about CONCOCT slurm log information and parallelization
#238
franciscozorrilla
closed
5 years ago
21
error extracting clusters
#237
madhubioinfo
closed
5 years ago
3
Previous
Next