BinPro CONCOCT issues - Githubissues

BinPro / CONCOCT

Clustering cONtigs with COverage and ComposiTion

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command not found for inital concoct steps

#336 lyisrae1 opened 1 month ago
0
Concoct won't read indexed bam file

#335 emily-ap opened 3 months ago
0
TypeError: write() argument must be str, not bytes

#334 ramnageena11 opened 6 months ago
2
logmodel.fit(X_train, y_train) not working

#333 fb87fb opened 6 months ago
0
Error in data type (feature table)

#332 ramnageena11 opened 9 months ago
0
extract_fasta_bins.py problem

#331 jiangshf5 opened 9 months ago
0
Why is concoct using all available threads instead of the mentioned number?

#330 anw-sh opened 1 year ago
0
Concoct endless warning due to OpenBLAS

#329 HouyuZhang opened 1 year ago
3
CONCOCT 0.4.1

#328 Guowei-nju opened 1 year ago
0
conda CONCOCT v1.1.0 recipe update for osx?

#327 franciscozorrilla opened 1 year ago
0
import vbgmm

#326 Vicbuz opened 1 year ago
2
How to run concoct

#325 minghong opened 1 year ago
1
concoct_refine fails under python3

#324 StickHu opened 1 year ago
0
TypeError: Feature names

#323 jpinus opened 1 year ago
2
Feature names are only supported if all input features have string names

#322 Rahimlou opened 1 year ago
9
Error with scikit-learn 1.2 : TypeError: Feature names

#321 nickp60 opened 1 year ago
9
TypeError: write() argument must be str, not bytes

#320 arijitnus closed 1 year ago
1
Concoct Error Could not retrieve index file

#319 howla1ke opened 2 years ago
2
Description of outputs

#318 vinisalazar opened 2 years ago
0
putative bug in cluster table

#317 Axolotl233 opened 2 years ago
0
endless OpenBLAS Warning again

#316 Xiaoyu2425 opened 2 years ago
1
.csv files not getting generated

#315 saras224 opened 2 years ago
0
Failed Cholesky decomposition in decomposeMatrix

#314 bebatut opened 2 years ago
0
using concoct on isolate sequencing samples

#313 franciscozorrilla opened 2 years ago
2
extract_fasta_bins.py generates KeyError: 'tmp_1.concoct_part_0'

#312 jflucier opened 2 years ago
1
merge_cutup_clustering.py truncates contig name when three zeros follow period

#311 ccgallen opened 2 years ago
2
CONCOCT 1.1.0 does not install via conda

#310 gregvonkuster opened 2 years ago
2
SEGFAULT and BUS error

#309 biotemon opened 2 years ago
0
unable to run concoct --composition_file

#308 sprajendra94 opened 2 years ago
0
Unresolved problem with concoct_coverage_table.py - write() argument must be str, not bytes

#307 Marlinski95 opened 3 years ago
10
Current Bioconda Installation Package Issues and Solutions

#306 RaphaellaJackson opened 3 years ago
0
Python 2.7 requirement and scripts when installing from `conda`

#305 vinisalazar opened 3 years ago
1
Missing output files

#304 Unaimend opened 3 years ago
0
Error during concoct_coverage_table.py: TypeError

#303 aparada opened 3 years ago
2
Error installing via conda

#302 Jigyasa3 opened 3 years ago
0
Interpreting the Validate.pl output

#301 gavinmdouglas opened 3 years ago
0
TypeError: write() argument must be str, not bytes

#300 Valentin-Bio-zz opened 3 years ago
9
dnadiff_dist_matrix.py test :: failure

#299 EricDeveaud closed 3 years ago
1
setup.py missing modules requirement

#298 EricDeveaud closed 3 years ago
1
out of memory errors with concoct_coverage_table.py

#297 fulaibaowang opened 3 years ago
0
pandas.errors.EmptyDataError: No columns to parse from file

#296 madhubioinfo opened 3 years ago
1
concoct_refine error

#295 tangminBio opened 4 years ago
1
vbgmm import error

#294 gwendolin closed 4 years ago
7
cut_up_fasta.py add *_concoct_part_0 to contigs that are not cut up

#293 sejmodha opened 4 years ago
0
CONCOCT uses more CPUs than requested with the --threads argument, unless user also sets OMP_THREAD_LIMIT to the right value

#292 fpusan opened 4 years ago
1
ERROR with concoct_coverage_table.py #question #error

#291 mutantjoo0 opened 4 years ago
4
Take long time?

#290 YT123-coder opened 4 years ago
2
'DataFrame' object has no attribute 'ix'

#289 Naima16 opened 4 years ago
1
error with concoct_coverage_table.py

#288 emaxortiz opened 4 years ago
0
Read length argument

#287 franciscozorrilla opened 4 years ago
0