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Bioconductor
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AnnotationForge
Tools for building SQLite-based annotation data packages
https://bioconductor.org/packages/AnnotationForge
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NCBI ftp: download fails
#59
tghazanchyan
opened
1 month ago
3
is.atomic(NULL) is FALSE now
#58
antalk2
opened
2 months ago
0
First pass at removing biomaRt
#57
grimbough
opened
5 months ago
8
Error in .makeOrgPackage(data, version = version, maintainer = maintainer, : All elements of '...' must have unique names
#56
liuliang577
closed
5 months ago
1
i get the failed to remove file, permission denied error while analysing micrroarray data
#55
Peter97221
closed
8 months ago
1
makeorgdb,提示错误Warning message: In file.remove(dbFileName) : cannot remove file './/org.My.eg.sqlite', reason 'Permission denied'
#54
Frybank
closed
1 year ago
7
Package from AnnotationForge is not available for this version of R
#53
phancanhtrinh
closed
1 year ago
2
Repeat building of makeOrgDbFromNCBI is significantly slower
#52
lshep
closed
8 months ago
5
Add RUnit to Suggests
#51
jwokaty
closed
1 year ago
0
"The 1st column must always be the gene ID 'GID'" error in makeOrgPackage
#50
LichengXX
closed
8 months ago
1
timeout adjustment not respected
#49
lshep
opened
1 year ago
24
Error in MakingNewAnnotationPackages vignette
#48
amanda-hi
closed
1 year ago
1
Error in making organism database using makeOrgPackageFromNCBI() function
#47
Anisha-gupta04
opened
1 year ago
6
Optimizations and allow specification of the desired Ensembl release
#46
knokknok
closed
1 year ago
11
Unnecessary queries?
#45
knokknok
closed
1 year ago
6
Why are all the calls to Ensembl set to version 80?
#44
knokknok
closed
1 year ago
2
Sqlforge rnw
#43
villafup
closed
1 year ago
1
Making new organism packages rnw
#42
villafup
closed
1 year ago
1
Convert makeProbePackage.Rnw to makeProbePackage.Rmd
#41
mcarlsn
closed
1 year ago
1
Error using makeOrgPackageFromNCBI()
#40
MarttaLG
opened
1 year ago
4
Error when running makeOrgPackage (unable to Populate gene_info table)
#39
C2051
closed
1 year ago
2
makeOrgPackageFromNCBI error when creating an annotation package
#38
gljivaer
closed
2 years ago
0
Error: Could not connect to database: unable to open database file
#37
yangskyfucker
closed
2 years ago
1
makeOrgPackage: out of memory
#36
yanpd01
closed
2 years ago
5
Error in h(simpleError(msg, call)) while trying calling makeOrgPackageFromNCBI()
#35
lananh-ngn
closed
2 years ago
3
No gene can be mapped
#34
shiyi-pan
opened
2 years ago
2
makeOrgPackageFromNCBI: Error in h(simpleError(msg, call))
#33
phoebee-h
opened
2 years ago
0
.get_file() helper in MakingNewAnnotationPackages.Rnw not working
#32
hpages
closed
2 years ago
2
Populating genes table: Erreur : database is locked
#31
TSolDour
closed
1 year ago
4
makeOrgPackageFromNCBI: Ensembl site unresponsive, trying useast mirror
#30
lshep
closed
2 years ago
1
How to add description with makeOrgPackage
#29
phoebee-h
closed
2 years ago
5
Error in FUN(X[[i]], ...) : data.frames in '...' cannot contain duplicated rows
#28
najibveto
closed
2 years ago
5
update doc and message the user
#27
vjcitn
closed
2 years ago
0
failure with vignette example
#26
vjcitn
closed
2 years ago
1
Error in compiling package
#25
BaylorSci
closed
2 years ago
3
A warning message of 'Permission denied'. How should I deal with it? Thanks very much
#24
Wull1994
closed
2 years ago
10
Fail to libaray the built package using makeOrgPackage
#23
hcph
closed
2 years ago
4
connection error while running makeOrgPackageFromNCBI()
#22
Easterwoman
closed
2 years ago
7
makeOrgPackageFromNCBI() error message
#21
mbxds5
closed
2 years ago
5
Error accessing url
#20
npokorzynski
closed
2 years ago
4
Input file to include KEGG pathway
#19
xie186
closed
2 years ago
1
goTable' GO Ids must be formatted like 'GO:XXXXXXX'
#18
najibveto
closed
3 years ago
3
makeOrgPackageFromNCBI never finishes
#17
npokorzynski
closed
2 years ago
3
Forge OrgDb package
#16
imalsoft9
closed
3 years ago
1
`org.Hs.eg.db::org.Hs.egPFAM` errors with `cannot coerce type 'closure' to vector of type 'character'`
#15
lgautier
closed
2 years ago
2
makeOrgPackage - ERROR: Two fields in the source DB have the same name.
#14
javier-pardodiaz
closed
3 years ago
5
problem with gene2unigene
#13
ldr89
closed
4 years ago
4
Error in bmRequest: Internal Server Error (HTTP 500) when calling markeOrgPackageFromNCBI()
#12
janstrauss1
closed
4 years ago
2
Error when running makeOrgPackageFromNCBI() from vignette
#11
janstrauss1
closed
4 years ago
4
Database created by makeOrgPackage() "not available for R 3.6.3"
#10
niahughes
closed
4 years ago
2
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