Bioconductor BiocStyle issues

Bioconductor / BiocStyle

Issues and pull requests for BiocStyle should go here.

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issues

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Adding `versioned` parameter to Biocpkg

#113 federicomarini opened 2 weeks ago
0
Behavior of BiocStyle::Biocpkg()

#112 federicomarini opened 2 weeks ago
4
Figure captions not respecting boundaries

#111 lisiarend opened 3 months ago
0
Styling when used with `kableExtra`

#110 dmurdoch opened 5 months ago
0
Package xcolor Error: Undefined color `fgcolor'.

#109 mtmorgan opened 5 months ago
2
Fix BiocStyle & pkgdown interaction

#108 zeehio opened 5 months ago
0
can this be used with quarto?

#107 vjcitn opened 11 months ago
0
keep_md fails

#106 dariotommasini opened 1 year ago
0
Test fails with TeXLive 2023

#105 tillea closed 7 months ago
11
large white space when adding custom #| fig-height:

#104 witszymanski opened 1 year ago
0
BiocStyle looks ugly with the latest pandoc

#103 LTLA opened 1 year ago
1
remove line breaks for rendering CRANpkg()

#102 LiNk-NY closed 1 year ago
2
Margin notes and other style

#101 witszymanski closed 1 year ago
3
extra comma after the second last author while inserting multiple authors

#100 luwanglw425 closed 2 years ago
2
address issue with Glimma plots not appearing

#99 grimbough opened 2 years ago
1
update css to fix table captions

#98 schifferl closed 1 year ago
0
BiocStyle::html_document fails to render Glimma plots

#97 nztao closed 2 years ago
0
Adding a dark-mode to HTML vignettes

#96 grimbough opened 2 years ago
0
Allowing references in R Markdown to PDF vignettes

#95 grimbough closed 1 year ago
7
`LaTeX Error: Environment CSLReferences undefined` when knitr pdf with BiocStyle

#94 YulongNiu opened 2 years ago
4
Error `Package soul Error: Reconstruction failed.` with PDF vignette

#93 grimbough opened 2 years ago
7
Issue with longtable patch and recent TexLive distributions

#92 grimbough closed 2 years ago
0
Accessibility tweaks

#91 grimbough closed 3 years ago
5
block quote font size control

#90 vjcitn closed 3 years ago
1
BiocStyle::pdf_document fails to render

#89 jtanevski closed 2 years ago
12
C stack usage too close to the limit - vignette knitting

#88 federicomarini closed 2 years ago
8
Maintain code block background colour

#87 grimbough closed 3 years ago
6
Unexpected change in styling for code blocks

#86 grimbough closed 3 years ago
10
'argument of length 0' in simple vignette with R-3.6.3 / BiocStyle 2.14.4 / knitr 1.31

#85 mtmorgan closed 3 years ago
1
Patch issue with out.width for smallfigure and widefigure environments

#84 grimbough closed 3 years ago
1
`fig.small` figures are only displayed when the browser window is sufficiently narrow

#83 mtmorgan closed 3 years ago
6
Added macro to link to Bioconductor books.

#82 LTLA closed 4 years ago
3
Error in if (is.na(options$out.width.px)) argument is length zero

#81 emiliesecherre closed 4 years ago
7
if (is.na(options$out.width.px)) options$out.width.px = options$fig.width * : argument is of length zero

#80 tschwarzl closed 4 years ago
1
Patch for the latest version of knitr

#79 LTLA closed 4 years ago
4
BiocStyle is broken with the latest knitr version

#78 LTLA closed 4 years ago
11
To crop plots BiocStyle needs magick package

#77 llrs opened 4 years ago
0
Enhance use_vignette_*()

#76 mtmorgan opened 4 years ago
1
plot incorrectly cropped when setting legend font face

#75 grlloyd opened 4 years ago
2
Enable horizontal scroll for code chunks

#74 LTLA closed 4 years ago
2
Author unexpectedly set to "immediate" in BiocStyle::pdf_document

#73 csoneson closed 2 years ago
7
Updating footnote finding regex

#72 grimbough closed 4 years ago
2
Rmd files fail to render with static svg?

#71 mtmorgan opened 4 years ago
8
Addition of two new functions

#70 Kayla-Morrell closed 4 years ago
4
MiKTeX compatibility issue on Windows

#69 hpages opened 4 years ago
19
Undefined control sequence \bioctitle

#68 hpages closed 4 years ago
16
BiocStyle update for mobile devices

#67 grimbough closed 4 years ago
12
Use html_vignette instead of html_document

#66 llrs opened 5 years ago
2
BiocStyle::html_document doesn't completely respect mfrow

#65 LTLA opened 5 years ago
2
Add tests for rmarkdown HTML and PDF output

#64 aoles opened 5 years ago
0