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BodenmillerGroup
/
steinbock
A toolkit for processing multiplexed tissue images
https://bodenmillergroup.github.io/steinbock
MIT License
49
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14
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[pre-commit.ci] pre-commit autoupdate
#268
pre-commit-ci[bot]
opened
1 week ago
0
Bug fix: set mask numpy dtype output as `uint32` instead of `uint16`
#266
matt-sd-watson
closed
2 months ago
1
Update build.yml to use self-hosted runner
#265
Milad4849
closed
2 months ago
0
Update build.yml
#264
Milad4849
closed
2 months ago
0
[pre-commit.ci] pre-commit autoupdate
#263
pre-commit-ci[bot]
closed
3 weeks ago
0
Update readimc to 0.7.0 + lenient parsing option
#262
matt-sd-watson
closed
3 months ago
2
update readimc to 0.7.0 for lenient parsing
#261
matt-sd-watson
closed
3 months ago
0
Strange invalid literal error..
#259
paulrbuckley-kcl
opened
4 months ago
2
steinbock apps ilastik - Ilastik crashing upon startup
#258
Will760
closed
4 months ago
1
[pre-commit.ci] pre-commit autoupdate
#257
pre-commit-ci[bot]
closed
3 months ago
0
deepcell segmenting error
#256
megankmckie
closed
3 months ago
2
error with preprocess imc images --hpf50
#255
megankmckie
closed
4 months ago
1
1 really poor, but essential, marker with extremely high background
#254
FelixShore1
closed
4 months ago
1
two sets of images with slightly different panels
#253
Will760
closed
4 months ago
4
issue of Segmentation fault
#252
dingxm
closed
4 months ago
1
Unable to find image 'preprocess:latest' locally error
#251
MAvdB-KCL
closed
4 months ago
1
[pre-commit.ci] pre-commit autoupdate
#250
pre-commit-ci[bot]
closed
4 months ago
0
random forest-based segmentation using Ilastik/CellProfiler
#249
mjnajafpanah
closed
4 months ago
6
preprocess imc panel Error
#248
LukasHats
closed
5 months ago
2
Cannot open Ilastik through steinbock apps ilastik command
#247
gemmawilson
closed
5 months ago
2
External OME.TIFF file segmentation , transformed from qptiff
#244
alexeykb
closed
5 months ago
11
[pre-commit.ci] pre-commit autoupdate
#243
pre-commit-ci[bot]
closed
5 months ago
0
Error: No panel/.mcd/.txt file found
#242
icepsi23
closed
6 months ago
4
Intensities csv labeling objects only evens
#241
megleila
closed
6 months ago
4
[pre-commit.ci] pre-commit autoupdate
#240
pre-commit-ci[bot]
closed
6 months ago
0
Documentation is inaccessible
#239
LenisLin
closed
7 months ago
0
ose
#238
Elena983
closed
7 months ago
1
qptiff format
#236
alexeykb
closed
7 months ago
3
Export AnnData error
#235
megleila
closed
6 months ago
3
[pre-commit.ci] pre-commit autoupdate
#234
pre-commit-ci[bot]
closed
7 months ago
0
[pre-commit.ci] pre-commit autoupdate
#233
pre-commit-ci[bot]
closed
8 months ago
0
[pre-commit.ci] pre-commit autoupdate
#232
pre-commit-ci[bot]
closed
8 months ago
0
Tiff Images from Leica Stellaris
#231
rana228
closed
6 months ago
4
Steinbock preprocess IMC produces empty TIFF files
#230
Dmitry-Khochanskiy
closed
7 months ago
2
steinbock measure neighbors very slow
#229
dingxm
closed
7 months ago
2
Differences in segmentation results
#228
DomenicoSkyWalker89
closed
9 months ago
12
[pre-commit.ci] pre-commit autoupdate
#227
pre-commit-ci[bot]
closed
9 months ago
0
Updated citation
#226
nilseling
closed
9 months ago
4
deepcell error
#225
francescaclemente
closed
8 months ago
6
Hot pixel filter issue
#224
giuliospinozzi
closed
9 months ago
2
Mask signal discordance
#223
megleila
closed
12 months ago
6
ArrayMemoryError - 'measure_centroid_distance_neighbors'
#222
paulrbuckley-kcl
closed
9 months ago
3
[pre-commit.ci] pre-commit autoupdate
#221
pre-commit-ci[bot]
closed
9 months ago
0
Unable to detect files and directories
#220
alasdairball
closed
9 months ago
9
Could not open ilastik GUI in windows
#219
ReethikaC
closed
6 months ago
4
Develop
#218
Milad4849
opened
1 year ago
5
corrected cellpose_view_cmd
#217
Milad4849
closed
9 months ago
0
Implemented cellpose2.0 model zoo and training
#216
Milad4849
closed
9 months ago
1
Develop
#215
Milad4849
closed
1 year ago
0
Cellpose app
#214
Milad4849
closed
1 year ago
1
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