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BouchardLab
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nsds_lab_to_nwb
Python package to convert NSDS Lab data to NWB files.
https://nsds-lab-to-nwb.readthedocs.io/en/latest/
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update stimulus lookup mechanism
#40
jihyunbak
closed
3 years ago
3
cleanup MetadataManager and separate io module
#39
jihyunbak
closed
3 years ago
0
Decide on docstring format
#38
JesseLivezey
closed
3 years ago
1
change how MetadataManager is used
#37
jihyunbak
closed
3 years ago
1
Get test folder setup on catscan
#36
JesseLivezey
closed
3 years ago
3
Where to save logging file? How to set logging config?
#35
JesseLivezey
closed
3 years ago
0
Set flake8 preferences
#34
JesseLivezey
closed
3 years ago
0
collect data scanners
#33
jihyunbak
closed
3 years ago
0
add timezone and update logging config setup
#32
jihyunbak
closed
3 years ago
0
introduce NeuralDataOriginator
#31
jihyunbak
closed
3 years ago
0
Refactor NWB builder pipeline
#30
jihyunbak
closed
3 years ago
2
Path updates
#29
JesseLivezey
closed
3 years ago
3
Downsample timeseries to nearest kHz
#28
JesseLivezey
closed
3 years ago
1
Try processing of new NWB output, and identify issues if any
#27
jihyunbak
closed
3 years ago
0
Streamline/simplify software hierarchy
#26
jihyunbak
closed
3 years ago
0
Tdt reader
#25
jthermiz
closed
3 years ago
0
Separate a base TDTreader from neural, mark, stim.
#24
JesseLivezey
closed
3 years ago
0
TDT pipeline errors due to metadata parsing
#23
jthermiz
closed
3 years ago
3
Test htk
#22
jthermiz
closed
3 years ago
3
htk --> nwb conversion
#21
jthermiz
closed
3 years ago
3
create an intermediate metadata.yaml file for inspection
#20
jihyunbak
closed
3 years ago
0
detect sample_rate from TDT/HTK
#19
jihyunbak
closed
3 years ago
3
include all streams from TDT
#18
jihyunbak
closed
3 years ago
1
rtd fixes
#17
JesseLivezey
closed
3 years ago
0
make references to metadata repo relative rather than absolute
#16
jihyunbak
closed
3 years ago
3
rtd fixes
#15
JesseLivezey
closed
3 years ago
0
stimulus processing depends on mark htk file
#14
jihyunbak
closed
3 years ago
4
add new pipeline
#13
jihyunbak
closed
3 years ago
0
[WIP] basic docs added
#12
JesseLivezey
closed
3 years ago
0
basic docs added
#11
JesseLivezey
closed
3 years ago
0
Tdt extractor
#10
jthermiz
closed
3 years ago
2
Prepare builder for behavior data
#9
jihyunbak
closed
3 years ago
2
TDT: raise error when user tries to get a datastream that does not exist
#8
jihyunbak
closed
3 years ago
0
Added tdt data and parameter extraction code.
#7
jthermiz
closed
3 years ago
4
Confirm/generalize stimulus file paths
#6
jihyunbak
closed
3 years ago
0
Require probe location in metadata
#5
jihyunbak
closed
3 years ago
1
Think about current metadata organization (modularized/cross-referencing)
#4
jihyunbak
closed
3 years ago
3
Fix filename convention & organization for block metadata files
#3
jihyunbak
closed
3 years ago
3
Create a static stimulus library
#2
jihyunbak
closed
3 years ago
3
Adding simple and fancy tdt to nwb electrical series converter methods
#1
jthermiz
closed
3 years ago
4
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