CDCgov multisignal-epi-inference issues

CDCgov / multisignal-epi-inference

Python package for statistical inference and forecast of epi models using multiple signals

https://cdcgov.github.io/multisignal-epi-inference/

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issues

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Use `scope` effect handler for distributions with multiple RandomVariable arguments

#228 damonbayer opened 8 hours ago
0
Ensure existing codebase follows new practices in developer documentation

#227 damonbayer opened 8 hours ago
0
Add `__call__` method for `RandomVariable` class that is an alias for `sample`

#226 damonbayer opened 8 hours ago
0
Rename `Model.sample` to `Model.model`

#225 damonbayer opened 8 hours ago
0
Add Developer Documentation

#224 damonbayer opened 1 day ago
1
Consider using `chex` in validation and/or testing

#223 dylanhmorris opened 1 day ago
1
Update CODEOWNERS file

#222 damonbayer closed 1 day ago
1
Demonstrate use of predictive distributions in tutorials using ArviZ

#221 damonbayer opened 1 day ago
1
Update tutorials formatting

#220 damonbayer closed 1 day ago
6
Add diagnostics using arviz to tutorials

#219 sbidari closed 1 day ago
1
Create methods for simulating from prior and computing predictive distributions

#218 damonbayer opened 2 days ago
5
Adding `t_start` and `t_unit`

#217 gvegayon opened 2 days ago
3
Using the new `timeseries_*` attributes in `RandomVariable`, remove padding whenever possible (hopefully everywhere).

#216 gvegayon opened 2 days ago
0
Incorporating attributes `timeseries_start` and `timeseries_unit` in all instances of `RandomVariable`, adding the corresponding values of `*_start` and `*_unit` when needed (e.g., the weekly effects should have `timeseries_unit = 7`).

#215 gvegayon opened 2 days ago
0
Create and name a subclass of `RandomVariable` to represent differenced timeseries

#214 dylanhmorris opened 3 days ago
1
Consider using `numpyro.contrib.control_flow.scan` over `jax.lax.scan`

#213 damonbayer opened 3 days ago
0
200 add diagnostics using arviz to tutorials

#212 sbidari closed 3 days ago
1
201 add visualizations using arviz to tutorials

#211 sbidari closed 2 days ago
11
User testing of `cfaepim` and `Model 2` reimplimentations

#210 dylanhmorris opened 4 days ago
0
Create and validate replication of site-level infection dynamics wastewater-informed model ("model 1")

#209 dylanhmorris opened 4 days ago
0
Separate pipeline from pyrenew

#208 damonbayer opened 4 days ago
4
Remove unneeded abstractions in model code (2)

#207 damonbayer closed 1 week ago
1
Should we call the infection seeding process "seeding"?

#206 dylanhmorris opened 1 week ago
0
Renaming infections_mean_varname to infections_varname

#205 gvegayon closed 4 days ago
7
Clean up Rt infections renewal model

#204 damonbayer closed 1 week ago
10
Fix dangling sentence in demo doc

#203 brandomr closed 1 week ago
1
Create and demonstrate methods for simulating from prior and computing predictive distributions

#202 damonbayer opened 1 week ago
1
Add visualizations using Arviz to tutorials

#201 sbidari closed 2 days ago
0
add diagnostics using Arviz to tutorials

#200 sbidari closed 1 day ago
0
Sync package versions and update numpyro

#199 damonbayer closed 1 week ago
1
Remove default name arguments for NumPyro sites from non-model classes

#198 damonbayer opened 1 week ago
1
Adding Repository Structure And Resources Sections To The README

#197 AFg6K7h4fhy2 closed 1 week ago
5
Implement infection seeding method from EpiAware

#196 damonbayer opened 1 week ago
0
Rename data variables in models for clarity

#195 damonbayer closed 2 weeks ago
1
Track new rst files in git

#194 damonbayer opened 2 weeks ago
0
Resources And Repository Structure To README

#193 AFg6K7h4fhy2 closed 1 week ago
0
Pseudo-Random Number Generation For None Input For JAX PRNGKey In Metaclass

#192 AFg6K7h4fhy2 closed 1 week ago
7
Pyrenew tutorial and tests review

#191 sbidari opened 2 weeks ago
4
Factory for additional convolve scanners

#190 damonbayer opened 2 weeks ago
0
Additional tests for convolve scanner factory functions

#189 damonbayer opened 2 weeks ago
0
Rt0 and Rt_rw should be `RandomVariable`s, not `dist.Distribtuion`s

#188 damonbayer opened 2 weeks ago
0
Remove unneeded abstractions in model code

#187 damonbayer closed 1 week ago
5
Fix offset in Hospital Admissions Model Figures and clean up code

#186 damonbayer closed 2 weeks ago
1
Time handling (related to data class)

#185 gvegayon closed 2 days ago
8
Removing defaults from RtRandomWalkProcess

#184 gvegayon closed 2 weeks ago
1
Revert "restrict filelock version"

#183 damonbayer closed 2 weeks ago
1
restrict filelock version

#182 damonbayer closed 2 weeks ago
1
Latest version of filelock breaks CI

#181 gvegayon closed 2 weeks ago
2
Explore adding touchstone in CI

#180 damonbayer opened 2 weeks ago
1
Renaming variables throughout for clarity

#179 damonbayer closed 2 weeks ago
1