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CDCgov
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multisignal-epi-inference
Python package for statistical inference and forecast of epi models using multiple signals
https://cdcgov.github.io/multisignal-epi-inference/
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Make Concentration in `NegativeBinomialObservation` a RandomVariable
#178
damonbayer
opened
2 weeks ago
0
Replace `new_convolve_scanner` and `new_double_scanner` function factories with `ConvolveScanner` classes?
#177
dylanhmorris
opened
2 weeks ago
1
Remove InfectionSeedingProcess_demo.py
#175
damonbayer
closed
2 weeks ago
1
Create and Validate Replication of Model 2 from cdcgov/wastewater-informed-covid-forecasting
#174
damonbayer
opened
2 weeks ago
0
Remove `poetry.lock` from version control
#173
damonbayer
closed
2 weeks ago
1
Standardize documentation file names and modularize docs in makefile
#172
damonbayer
closed
2 weeks ago
1
Modularize model/makefile
#171
damonbayer
closed
2 weeks ago
1
Port Draft Plan in SharePoint to GitHub Issues / Projects
#170
damonbayer
closed
4 days ago
1
Create forecasting interface
#169
damonbayer
opened
2 weeks ago
12
Planning for handling/tracking of deterministic nodes
#168
damonbayer
opened
3 weeks ago
1
Fix offset in Hospital Admissions Model Figures
#167
damonbayer
closed
2 weeks ago
0
Identify areas for improvement in tutorials and tests
#166
damonbayer
opened
3 weeks ago
1
Update argument names in infectionswithfeedback.py
#165
damonbayer
closed
6 days ago
0
Bump tornado from 6.4 to 6.4.1 in /model
#164
dependabot[bot]
closed
3 weeks ago
1
Genericize hospital admissions to delayed_incidence_observations
#163
damonbayer
opened
3 weeks ago
0
Tutorial: Porting An Existing Model (Influenza-Epidemia) To MSR
#162
AFg6K7h4fhy2
opened
3 weeks ago
6
Refactor convolve scanner factory functions
#161
dylanhmorris
closed
2 weeks ago
5
Re-remove transform.py
#160
damonbayer
closed
3 weeks ago
1
Format Quarto docs in pre-commit
#159
damonbayer
opened
3 weeks ago
0
Adding the periodic and ~~weekly~~ day of the week effects and refactoring
#158
gvegayon
closed
2 weeks ago
7
Re-remove `transform.py`
#157
dylanhmorris
closed
3 weeks ago
0
Standardize language: `duration` vs `n_timepoints`
#156
damonbayer
closed
2 weeks ago
0
Standardize between `snake_case` and `kebab-case` in names of documentation files
#155
dylanhmorris
closed
2 weeks ago
0
Renaming datautils to arrayutils
#154
gvegayon
closed
3 weeks ago
3
Read columns with correct data types in datasets module
#153
damonbayer
closed
3 weeks ago
2
Check that tutorials can render for Pull Requests
#152
damonbayer
closed
3 weeks ago
1
Investigate within-chain parallelization in `numpyro`
#151
dylanhmorris
opened
3 weeks ago
0
Read columns with correct data types in datasets module
#150
damonbayer
closed
3 weeks ago
0
Rename `datautils` module to `arrayutils`
#149
dylanhmorris
closed
3 weeks ago
0
Record deterministic `RandomVariables` by default
#148
damonbayer
closed
3 weeks ago
3
Add transforms to `new_convolve_scanner`, make identity transforms default for `new_double_scanner`
#147
dylanhmorris
closed
2 weeks ago
0
Remove default seed value from `run`
#146
dylanhmorris
closed
1 week ago
1
Get rid default transformation and default rw distribution in `RtRandomWalkProcess`
#145
gvegayon
closed
2 weeks ago
0
All processes return tuple(array) with array length equal to .
#144
gvegayon
closed
3 weeks ago
5
Process returns tuple with array equal to duration (patch to PR 123)
#143
gvegayon
closed
1 month ago
2
Standardize output length for functions that yield sequences/timeseries
#142
dylanhmorris
closed
3 weeks ago
3
Fix docstring typo in `logistic_susceptibility_adjustment`
#141
dylanhmorris
closed
1 month ago
1
Refactor transform module to wrap `numpyro.distributions.transforms`
#140
gvegayon
closed
1 month ago
6
Explore adding ArviZ dependency for diagnostics and visualization
#139
damonbayer
closed
1 week ago
2
New metaclass.DistributionalRV
#138
gvegayon
closed
1 month ago
1
Renaming sample_infections to compute_future_infections
#137
gvegayon
closed
1 month ago
2
docstring wording tweak: change "inputted" to "passed"
#136
dylanhmorris
closed
1 month ago
1
Instantiate CFA's Epidemia-For-Flu Model Via MSR
#135
AFg6K7h4fhy2
opened
1 month ago
3
Data pipeline for NWSS
#134
gvegayon
opened
1 month ago
0
Namespace patching
#133
gvegayon
closed
1 month ago
1
Rename `sample_infections` to `compute_infections`
#132
dylanhmorris
closed
1 month ago
0
Weekly Rt with autoregressive difference
#131
gvegayon
closed
3 weeks ago
5
Bump requests from 2.31.0 to 2.32.2 in /model
#130
dependabot[bot]
closed
1 month ago
1
Bump requests from 2.31.0 to 2.32.0 in /docs
#129
dependabot[bot]
closed
1 month ago
1
Abandon or rewrite custom Transform class in favor of `numpyro.distributions.transforms`
#128
damonbayer
closed
1 month ago
1
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